ICU-MM

ICU-MM is a multimodal ICU research project built on MIMIC-IV and MIMIC-CXR. This repository contains data preprocessing pipelines and processed structured datasets.

Project Structure

ICU_MM/
├── data/
│   ├── raw/
│   │   └── mimiciv/                # PhysioNet data (not tracked)
│   └── comb/                      # Processed structured data (external)
│       ├── README.md
│       └── data_dictionary.md
├── scripts/                       # Data build scripts
│   ├── build_cohort.py
│   ├── build_labs.py
│   ├── build_prescriptions.py
│   ├── build_respiratory_chartevents.py
│   ├── build_respiratory_procedureevents.py
│   └── build_respiratory_failure_labels.py
├── .gitignore
├── LICENSE
└── README.md

Data Build Order

1. Build ICU cohort
2. Filter labs
3. Filter prescriptions
4. (Later) Add vitals and imaging

All data builds are reproducible via scripts in scripts/.

IMP This repository does not include large MIMIC-derived datasets. To reproduce data/comb/*.csv, place raw MIMIC-IV files under data/raw/ (ignored by git) and run the build scripts in scripts/.

Processed Data Access

Due to GitHub file size limits and PhysioNet data usage requirements, processed MIMIC-IV datasets are not stored directly in this repository.

Processed ICU-MM datasets (Google Drive)
https://drive.google.com/drive/folders/1f2BID6N4WFFaeZdBwUW_KKtSYHURnw0F?usp=sharing

How to use

1. Download all CSV files from the Google Drive link above
2. Place them under the following directory structure: