PredictPhagePPI

DTU on predicting phage interactions given phage and target bacterias sequenced genomes as well as interaction

Setup

Run

1. "make"
2. chmod +rx ./scripts/*
3. pipreqsnb . --force
4. ./scripts/check_requirements.sh in a unix terminal
5. pip install -e . #@root

notes

KU library preperation using Hackflex; https://github.com/GaioTransposon/Hackflex

Identify key proteins in genomes:

• Depolymerases; https://link.springer.com/article/10.1186/s12929-023-00928-0
• Anti-defense (CRISPR?)
• Modifying enzymes
• Integrases