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Snakefiles for dsDNA based on MARTINI website tutorial and a new example for a ssDNA.

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
.gitignore		.gitignore
ACAGCTAGCATGCATGCA-DS.pdb		ACAGCTAGCATGCATGCA-DS.pdb
LICENSE		LICENSE
README.md		README.md
bio.yaml		bio.yaml
bio2.yaml		bio2.yaml
dsDNA.Snakefile		dsDNA.Snakefile
ssDNA.Snakefile		ssDNA.Snakefile

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MARTINI-DNA-tutorials

Snakefile for dsDNA setup and simulation based on MARTINI website tutorial
Snakefile for a ssDNA setup and simulation.

Requirements:

python 3 with snakemake package
python 2 for martinize-dna.py
GROMACS 5 or 2016 (untested with 2018 or 2019)

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Snakefiles for dsDNA based on MARTINI website tutorial and a new example for a ssDNA.

tutorial simulation dna gromacs martini-cg

GPL-3.0 license

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