Ccfv2 mouse details#481
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Added information regarding CCFv2 Mouse Atlases, and fixed case of other atlas names to be in Title Case.
Added details about various Allen CCFv2 mouse brain atlases and their available versions.
Used HTML rather than Markdown in order to resize images
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| ### [Allen CCFv2 Developmental Mouse Brain Atlas](https://doi.org/10.1038/nature05453) | ||
| This is a developmental mouse brain atlas using version 2 of the commonly used Allen Common Coordinate Framework. | ||
| The template is based on population average coronal slices with Nissl staining, and annotates the fiber tracts |
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I don't know if it is a population average nissl i think its just one animal?
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also the latter half of this sentence seems to maybe relate to the fiber atlas
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Yes you're right, it seems like the sections were drawn straight from the ARA specimen. Am I right in saying that both CCFv1 and CCFv2 are based on the same coronal 25um slices taken from the same specimen, whereas CCFv3 was based on a population average of 1675 mice? I think I'd gotten confused with the documentation for the different versions.
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good job :) i just have some minor comments |
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In reading over the documentation more, I've found that many different sources (CCFv3 technical white paper, CCFv3 publication) actually seem to point to https://doi.org/10.1038/nature13186 instead as the publication for this atlas, so I'll update the documentation and the packaging scripts accordingly. |
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Oh really? They point towards that publication for the CCFv2? I understand why some might for the v3 but for v2 confuses me a bit. Could you point me towards what parts of those papers you are referring to? Thank you for reading into this in so much detail! |
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just read it
Wow I had no idea. Good catch :) |
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Description
Added information regarding CCFv2 Mouse Atlases, and fixed case of other atlas names to be in Title Case.
What is this PR
What does this PR do?
Update documentation of atlases in the table of available atlases.
References
PR for atlas
Issue in brainglobe-atlasapi
Publication: https://doi.org/10.1038/nature05453
https://download.alleninstitute.org/informatics-archive/october-2014/annotation/
Checklist: