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Allow null genotype#1

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ah19 wants to merge 19 commits into
bunop:masterfrom
Congenica:feature/allow_null_genotype
Closed

Allow null genotype#1
ah19 wants to merge 19 commits into
bunop:masterfrom
Congenica:feature/allow_null_genotype

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@ah19

@ah19 ah19 commented Mar 26, 2018

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@ah19 ah19 closed this Mar 26, 2018
@bunop

bunop commented Mar 26, 2018

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Hi. Thank you for the contribution. I have some considerations to make. I will do them in the next days

@bunop

bunop commented Mar 27, 2018

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Thank you again for this PR #1 @ah19, some few considerations:

  • When submitting a PR, don't delete branches: pull request will be closed and the only way to deal with your code is to modify an inactive PR
  • This is a Python 2 module: python2 will be updated until 2020
  • There are now better modules do deal with VCF, I suggest cyvcf2 which incorporate htslib library and I think this is the faster library to read a VCF file in python (version 2 and 3 supported)
  • In my opinion, anaconda is a better python package manager than pyenv.

Anyway, I've integrated your code in my dev branch since I've open a pull request years ago to the original project, however I think that this is no longer mantained.

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3 participants