Allow null genotype#1
Closed
ah19 wants to merge 19 commits into
Closed
Conversation
While writing VCF metadata with the Writer class, ordering could put the vcf file format metadata after others metadata, causing warnings while dealing with VCF and breaking analises with the last BCF tools
e to explain why this merge is necessary,
The Writer class make use of csv.writer which by default uses the windows encoding line terminator while writing files. Forced to use the standard '\n' newline
Owner
|
Hi. Thank you for the contribution. I have some considerations to make. I will do them in the next days |
Owner
|
Thank you again for this PR #1 @ah19, some few considerations:
Anyway, I've integrated your code in my dev branch since I've open a pull request years ago to the original project, however I think that this is no longer mantained. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.