Update combine_PRS.R#4
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soren944 wants to merge 6 commits intobuutrg:mainfrom
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I came across PGS files with a alternate column name "#IID" instead of "IID". Instead of manually changing the column name for every PGS file it will now recognize altered names. The only prerequisite is that the IID column's alternate name contains the pattern "IID". The name is subsequently change to "IID" only if there is not a complete pattern match to allow for IID merging later in the script.
The current script cannot handle multiple PGS score files that share the same name for SUM column. Created a new option to specify the new names for the columns. I also altered the sub-setting of trait specific PGS to reflect the change in names. Added an error statement to indicate whether the new name list does not have the same length as the number of PGS scores under consideration.
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I came across PGS files with an alternate column name "#IID" instead of "IID". Instead of manually changing the column name for every PGS file it will now recognize altered names. The only prerequisite is that the IID column's alternate name contains the pattern "IID". The name is subsequently changed to "IID" only if there is not a complete pattern match to allow for IID merging later in the script.