Bayesian MCMC to estimate hierarchical tree-based sequence context models
Baymer requires mini-conda for installation. For information on installing mini-conda for your operating system, please view https://docs.conda.io/en/latest/miniconda.html.
After installing mini-conda, run the following commands to install Baymer:
- git clone https://github.com/bvoightlab/Baymer
- cd Baymer
- source install.sh
Installation should take less than 5 minutes.
Note that all scripts can be run as standalone programs or imported and collapsed into a single script, as demonstrated in the tutorial jupyter notebook.