The code is used for performing analysis in PanACEA.

Requirements

System

• Python 3.8+
• R 4.0+ (required by rpy2 and pyreadr)

Install R from cran.r-project.org before installing Python dependencies.

Python packages

pip install -r requirements.txt

bioRXiv version of paper can be found here: https://www.biorxiv.org/content/10.1101/2023.10.08.561457v3.abstract