GitHub - cc2qe/sandbox: Primordial soup of short scripts

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 289 Commits
1kg_align		1kg_align
bamstat		bamstat
cinSpan		cinSpan
clustertools		clustertools
epistats		epistats
fastx_toolkit-0.0.13-mghCustom		fastx_toolkit-0.0.13-mghCustom
jumpCoverage		jumpCoverage
ldsearch		ldsearch
miRNA_analysis		miRNA_analysis
proteinNet		proteinNet
readPairCluster		readPairCluster
templates		templates
unmappedToFastq-0.0.1		unmappedToFastq-0.0.1
.gitignore		.gitignore
Ill2SangerFASTQ.pl		Ill2SangerFASTQ.pl
README.md		README.md
annotate_rd.py		annotate_rd.py
block.py		block.py
bwa_aln.sh		bwa_aln.sh
clusterBedpe.py		clusterBedpe.py
column_select.py		column_select.py
deconvolute.2.py		deconvolute.2.py
deconvolute.py		deconvolute.py
designprobes_v2.pl		designprobes_v2.pl
explain_sam_flags.py		explain_sam_flags.py
expr_stats.py		expr_stats.py
fixPlinkBim.py		fixPlinkBim.py
marksomatic.py		marksomatic.py
pheno_samples.py		pheno_samples.py
plot_histogram.R		plot_histogram.R
posArg.py		posArg.py
primers.py		primers.py
probeTiler.py		probeTiler.py
qkill		qkill
qpeek		qpeek
queueLong.sh		queueLong.sh
quick_q		quick_q
rdgt.py		rdgt.py
runBamstat.sh		runBamstat.sh
runBamstat.sh.bak		runBamstat.sh.bak
runBamstat3.sh		runBamstat3.sh
simanneal.py		simanneal.py
splitReadSamToBedpePatch		splitReadSamToBedpePatch
splitterToBreakpointExt		splitterToBreakpointExt
splitterToBreakpointExt.bak		splitterToBreakpointExt.bak
splitterToBreakpointExtStrandBug		splitterToBreakpointExtStrandBug
stripinfo		stripinfo
stripprob		stripprob
sv_classifier.py		sv_classifier.py
sv_genotype.py		sv_genotype.py
sv_genotype_dup.py		sv_genotype_dup.py
sv_genotype_inv.py		sv_genotype_inv.py
transpose		transpose
trimFastq.py		trimFastq.py
trio.py		trio.py
unc_rnaseqV2_pipeline.sh		unc_rnaseqV2_pipeline.sh
unc_rnaseqV2_pipeline_se.sh		unc_rnaseqV2_pipeline_se.sh
unmappedToFastq		unmappedToFastq
upperquartilenorm.py		upperquartilenorm.py
vcfsort		vcfsort
x.sh		x.sh
z_prob.R		z_prob.R