fullGO.NA update but got did not work

[mmcardozo]

Dear Christiane,

I am using an old script to update the most recent version of GO terms:

#parsing GO to create a table with information on obsolete and replaced goterms as well as alternative ids and other goterms to consider
#only execute once (takes about 15min!)
#reuse fullGO.NA
#repeat when newer GO version available
#download at ftp://ftp.geneontology.org/pub/go/ontology/gene_ontology_edit.obo
mv gene_ontology_edit.obo fullGO.obo
grep -A3 '^\[Term\]$' fullGO.obo > fullGO.terms
grep '^id:' fullGO.terms | cut -d' ' -f2 > fullGO.id
grep '^name:' fullGO.terms | sed 's/ /\t/' | cut -d$'\t' -f2 > fullGO.name
grep '^namespace:' fullGO.terms | cut -d' ' -f2 > fullGO.namespace
mkdir Obsolete; cd Obsolete
asplit '^\[Term\]$' 1 < ../fullGO.obo
rm out.0
rm ../fullGO.obsolete
for i in $(ls -1v out.*)
do
  echo ${i}
  grep '^id:' ${i} | cut -d' ' -f2 > id.tmp
  grep '^is_obsolete:' ${i} | cut -d' ' -f2 > obsolete.tmp
  grep '^alt_id:' ${i} | cut -d' ' -f2 | tr '\n' ';' > alt_id.tmp 
  grep '^consider:' ${i} | cut -d' ' -f2 | tr '\n' ';' > consider.tmp
  grep '^replaced_by:' ${i} | cut -d' ' -f2 | tr '\n' ';' > replaced.tmp
  paste id.tmp obsolete.tmp consider.tmp replaced.tmp alt_id.tmp >> ../fullGO.obsolete
  rm id.tmp
  rm obsolete.tmp
  rm alt_id.tmp
  rm consider.tmp
  rm replaced.tmp
done
cd ..
tail fullGO.obsolete #last file also contained edge ID --> remove
grep '^GO' fullGO.obsolete > fullGO_good.obsolete
cut -f1 fullGO_good.obsolete | diff - fullGO.id #no differences
paste fullGO_good.obsolete fullGO.name fullGO.namespace > fullGO.NA

However I got an error at line 7: asplit '^\[Term\]$' 1 < ../fullGO.obo (which I changed to spit

mcardozo@ollie0:~/ownSoft/Uproc/Obsolete$ split '^[Term]$' 1 < ../fullGO.obo
split: cannot open ‘^\[Term\]$’ for reading: No such file or directory

Is it possible that a line is missing? because in neither attempt the code did not produced the fullGO.obsolete

Any ideas?

Cheers,
Magda