Unmerged updates for stacking and auto spectrum analyses#16

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sjforeman wants to merge 102 commits intomainfrom

sf/auto_for_merge

Commits on Sep 29, 2021

Commits on Dec 20, 2024

Commits on Jun 18, 2025

feat(RunMCMC): add config property for data_2d

albin
authored and
sjforeman
committed
fix(AutoSignalTemplate2D): set default nbins = 7

albin
authored and
sjforeman
committed
feat(load_from_ps2Dfiles): modify to load templates based on new filename

albin
authored and
sjforeman
committed
fix(multiply_pre_noncomp): calculate the conversion factor connecting tau and k_parallel

albin
authored and
sjforeman
committed
feat(average_data): modify the variance calculation when we have single mock

albin
authored and
sjforeman
committed
refactor(AutoSignalTemplate2D): change print to logger.debug
sjforeman
committed
refactor(AutoSignalTemplate2DFoG): use cora definitions of nu21, c
sjforeman
committed
refactor(average_data): remove commented line
sjforeman
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fix: update power spectrum container/dataset/axis names
sjforeman
committed
fix(containers): redefine datasets in Mock containers
sjforeman
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fix(mcmc, utils): update for PowerSpectrum pol labels
sjforeman
committed
fix(average_data): set axes and k datasets correctly
sjforeman
committed
feat: add force_real option
sjforeman
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fix(average_data): propagate mask and neff for 2d power spectrum
sjforeman
committed
fix(models, signal): fix docstring escape sequence errors
sjforeman
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feat(Model): add negative_log_likelihood method
sjforeman
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feat(models): add null model
sjforeman
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fix(AutoSimulationTemplate2Dto1D): remove unused k1D check
sjforeman
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fix(containers, mcmc, utils): correctly handle datasets without mock axis
sjforeman
committed
feat(mcmc, utils): handle inputs with Stokes parameters
sjforeman
committed
feat(run_mcmc): add warning if thinned chain has length zero
sjforeman
committed
fix(AutoSignalTemplate2D): switch to more general regex for templates
sjforeman
committed
feat(models, signal): add ability to specify filename glob for templates
sjforeman
committed
fix(AutoSignalTemplate2D): fix template directory regex
sjforeman
committed
fix(run_mcmc): save PowerSpectrum1D k1D to output container
sjforeman
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feat(run_mcmc): save model/param info in output container
sjforeman
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feat(models, signal): add 2d models that sample in omega^2
sjforeman
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feat(chisq, containers): add code for detection significance computation via Monte Carlo
sjforeman
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fix(mcmc), style: fix bug in saving pol_fit, and blacken
sjforeman
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(feat): add MockPowerSpectrum1D container support from fitstack

albin
authored and
sjforeman
committed
(feat): add cached binning scheme for 1D power spectrum template

albin
authored and
sjforeman
committed
feat(models): allow user to toggle slow 2d-to-1d binning
sjforeman
committed
style: blacken
sjforeman
committed
refactor(initialize_pol): remove unused variables
sjforeman
committed

Commits on Oct 3, 2025

Commits on Oct 4, 2025

feat(chisq_test): code that was used for stacking analysis

Seth Siegel
authored and
sjforeman
committed
feat(mcmc): add ability to toggle emcee progress bar
sjforeman
committed

Commits on Nov 17, 2025