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Metadata De-identification Manual

Introduction

The DICOM metadata de-identification process in CHoRUS is performed in two steps:

Step 1: De-identificaiton Using Pydicom Script

  • PatientID and AccessionNumber in teh DICOM metadata are replaced by person_id and image_occurrence_id from the OMOP table.
  • Selected data tags (Table 1) are shifted by a predefined number of days (specific to each PatientID)

Table 1. Date tags to be shifted

Group Element Tag_name
0008 0012 Instnce Createion Date
0008 0020 Study Date
0008 0021 Series Date
0008 0022 Acquisition Date
0008 0023 Content Date
0008 002a Acquisition Date time
0010 0030 Patient Birth Date
0018 1012 Date of Secondary Capture
0018 1078 Radio pharmaceutical Start Date Time
0018 1079 Radio pharmaceutical Stop Date Time
0018 1200 Date of Last Calibration
0018 700c Date of Last Detector Calibration
0032 1000 Scheduled Study Start Date
0032 1010 Scheduled Study Stop Date
0032 1040 Study Arrival Date
0032 1050 Study Completion Date
0038 0020 Admitting Date
0038 0030 Discharge Date
3006 0008 Structure Set Date

Step 2: De-identification Using RSNA CTP software

  • Remaining DICOM metadata is de-identified using the RSNA CTP software
  • Pre-identifeid tags (PatientID, AccessionNumber, selected date tags in Table 1) from Step 1 are preserved

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