Skip to content
This repository was archived by the owner on Jun 12, 2021. It is now read-only.

commfish/great_escape

Repository files navigation

Pot gear selectivity as a function of escape ring size

Escape ring study to estimate length-based selectivity for a sablefish pot gear fishery in Southeast Alaska.

alt text

Reproducibility information

> devtools::session_info()
- Session info -------------------------------------------------
 setting  value                       
 version  R version 3.5.3 (2019-03-11)
 os       Windows >= 8 x64            
 system   x86_64, mingw32             
 ui       RStudio                     
 language (EN)                        
 collate  English_United States.1252  
 ctype    English_United States.1252  
 tz       America/Anchorage           
 date     2020-01-31                  

- Packages -----------------------------------------------------
   package      * version  date       lib source        
   abind          1.4-5    2016-07-21 [1] CRAN (R 3.5.2)
   arm            1.10-1   2018-04-13 [1] CRAN (R 3.5.3)
   assertthat     0.2.1    2019-03-21 [1] CRAN (R 3.5.3)
   backports      1.1.5    2019-10-02 [1] CRAN (R 3.5.3)
   base64enc      0.1-3    2015-07-28 [1] CRAN (R 3.5.2)
   bayesplot      1.7.0    2019-05-23 [1] CRAN (R 3.5.3)
   boot           1.3-20   2017-08-06 [2] CRAN (R 3.5.3)
   broom        * 0.5.2    2019-04-07 [1] CRAN (R 3.5.3)
   callr          3.3.2    2019-09-22 [1] CRAN (R 3.5.3)
   captioner    * 2.2.3    2015-07-16 [1] CRAN (R 3.5.3)
   ciTools      * 0.5.1    2019-01-08 [1] CRAN (R 3.5.3)
   cli            1.1.0    2019-03-19 [1] CRAN (R 3.5.3)
   coda           0.19-3   2019-07-05 [1] CRAN (R 3.5.3)
   codetools      0.2-16   2018-12-24 [2] CRAN (R 3.5.3)
   colorspace     1.4-1    2019-03-18 [1] CRAN (R 3.5.3)
   colourpicker   1.0      2017-09-27 [1] CRAN (R 3.5.3)
   cowplot      * 1.0.0    2019-07-11 [1] CRAN (R 3.5.3)
   crayon         1.3.4    2017-09-16 [1] CRAN (R 3.5.3)
   crosstalk      1.0.0    2016-12-21 [1] CRAN (R 3.5.3)
   data.table   * 1.12.2   2019-04-07 [1] CRAN (R 3.5.3)
   DBI          * 1.0.0    2018-05-02 [1] CRAN (R 3.5.3)
   desc           1.2.0    2018-05-01 [1] CRAN (R 3.5.3)
   devtools       2.1.0    2019-07-06 [1] CRAN (R 3.5.3)
   digest         0.6.21   2019-09-20 [1] CRAN (R 3.5.3)
   dplyr        * 0.8.3    2019-07-04 [1] CRAN (R 3.5.3)
   DT             0.8      2019-08-07 [1] CRAN (R 3.5.3)
   dunn.test      1.3.5    2017-10-27 [1] CRAN (R 3.5.2)
   dygraphs       1.1.1.6  2018-07-11 [1] CRAN (R 3.5.3)
   fansi          0.4.0    2018-10-05 [1] CRAN (R 3.5.3)
   fs             1.3.1    2019-05-06 [1] CRAN (R 3.5.3)
   FSA          * 0.8.25   2019-07-24 [1] CRAN (R 3.5.3)
   generics       0.0.2    2018-11-29 [1] CRAN (R 3.5.3)
   ggdendro       0.1-20   2016-04-27 [1] CRAN (R 3.5.3)
   ggformula    * 0.9.1    2019-01-12 [1] CRAN (R 3.5.3)
   ggplot2      * 3.2.1    2019-08-10 [1] CRAN (R 3.5.3)
   ggpubr       * 0.2.3    2019-09-03 [1] CRAN (R 3.5.3)
   ggrepel        0.8.1    2019-05-07 [1] CRAN (R 3.5.3)
   ggridges       0.5.1    2018-09-27 [1] CRAN (R 3.5.3)
   ggsignif       0.6.0    2019-08-08 [1] CRAN (R 3.5.3)
   ggstance     * 0.3.3    2019-08-19 [1] CRAN (R 3.5.3)
   glue           1.3.1    2019-03-12 [1] CRAN (R 3.5.3)
   gridExtra      2.3      2017-09-09 [1] CRAN (R 3.5.3)
   gtable         0.3.0    2019-03-25 [1] CRAN (R 3.5.3)
   gtools         3.8.1    2018-06-26 [1] CRAN (R 3.5.2)
   highr          0.8      2019-03-20 [1] CRAN (R 3.5.3)
   hms            0.5.1    2019-08-23 [1] CRAN (R 3.5.3)
   htmltools      0.3.6    2017-04-28 [1] CRAN (R 3.5.3)
   htmlwidgets    1.3      2018-09-30 [1] CRAN (R 3.5.3)
   httpuv         1.5.1    2019-04-05 [1] CRAN (R 3.5.3)
   igraph         1.2.4.1  2019-04-22 [1] CRAN (R 3.5.3)
   inline         0.3.15   2018-05-18 [1] CRAN (R 3.5.3)
   jsonlite       1.6      2018-12-07 [1] CRAN (R 3.5.3)
   KernSmooth     2.23-15  2015-06-29 [2] CRAN (R 3.5.3)
   knitr        * 1.24     2019-08-08 [1] CRAN (R 3.5.3)
   labeling       0.3      2014-08-23 [1] CRAN (R 3.5.2)
   later          0.8.0    2019-02-11 [1] CRAN (R 3.5.3)
   lattice      * 0.20-38  2018-11-04 [2] CRAN (R 3.5.3)
   lazyeval       0.2.2    2019-03-15 [1] CRAN (R 3.5.3)
   leaflet        2.0.2    2018-08-27 [1] CRAN (R 3.5.3)
   lme4           1.1-21   2019-03-05 [1] CRAN (R 3.5.3)
   loo            2.1.0    2019-03-13 [1] CRAN (R 3.5.3)
   lubridate    * 1.7.4    2018-04-11 [1] CRAN (R 3.5.3)
   magrittr     * 1.5      2014-11-22 [1] CRAN (R 3.5.3)
   markdown       1.1      2019-08-07 [1] CRAN (R 3.5.3)
   MASS           7.3-51.4 2019-04-26 [1] CRAN (R 3.5.3)
   Matrix       * 1.2-17   2019-03-22 [1] CRAN (R 3.5.3)
   matrixStats    0.55.0   2019-09-07 [1] CRAN (R 3.5.3)
   memoise        1.1.0    2017-04-21 [1] CRAN (R 3.5.3)
   mime           0.7      2019-06-11 [1] CRAN (R 3.5.3)
   miniUI         0.1.1.1  2018-05-18 [1] CRAN (R 3.5.3)
   minqa          1.2.4    2014-10-09 [1] CRAN (R 3.5.3)
   mosaic       * 1.5.0    2019-01-12 [1] CRAN (R 3.5.3)
   mosaicCore     0.6.0    2018-06-24 [1] CRAN (R 3.5.3)
   mosaicData   * 0.17.0   2018-06-23 [1] CRAN (R 3.5.3)
   munsell        0.5.0    2018-06-12 [1] CRAN (R 3.5.3)
   nlme           3.1-137  2018-04-07 [2] CRAN (R 3.5.3)
   nloptr         1.2.1    2018-10-03 [1] CRAN (R 3.5.3)
   pillar         1.4.2    2019-06-29 [1] CRAN (R 3.5.3)
   pkgbuild       1.0.6    2019-10-09 [1] CRAN (R 3.5.3)
   pkgconfig      2.0.3    2019-09-22 [1] CRAN (R 3.5.3)
   pkgload        1.0.2    2018-10-29 [1] CRAN (R 3.5.3)
   plyr           1.8.4    2016-06-08 [1] CRAN (R 3.5.3)
   prettyunits    1.0.2    2015-07-13 [1] CRAN (R 3.5.3)
   processx       3.4.1    2019-07-18 [1] CRAN (R 3.5.3)
   promises       1.0.1    2018-04-13 [1] CRAN (R 3.5.3)
   ps             1.3.0    2018-12-21 [1] CRAN (R 3.5.3)
   purrr          0.3.2    2019-03-15 [1] CRAN (R 3.5.3)
   R6             2.4.0    2019-02-14 [1] CRAN (R 3.5.3)
   Rcpp           1.0.2    2019-07-25 [1] CRAN (R 3.5.3)
   readr        * 1.3.1    2018-12-21 [1] CRAN (R 3.5.3)
   remotes        2.1.0    2019-06-24 [1] CRAN (R 3.5.3)
   reshape2       1.4.3    2017-12-11 [1] CRAN (R 3.5.3)
   rlang          0.4.0    2019-06-25 [1] CRAN (R 3.5.3)
   ROracle      * 1.3-1    2016-10-26 [1] CRAN (R 3.5.3)
   rprojroot      1.3-2    2018-01-03 [1] CRAN (R 3.5.3)
   rsconnect      0.8.15   2019-07-22 [1] CRAN (R 3.5.3)
   rstan        * 2.19.2   2019-07-09 [1] CRAN (R 3.5.3)
   rstudioapi     0.10     2019-03-19 [1] CRAN (R 3.5.3)
   scales         1.0.0    2018-08-09 [1] CRAN (R 3.5.3)
   sessioninfo    1.1.1    2018-11-05 [1] CRAN (R 3.5.3)
   shiny        * 1.3.2    2019-04-22 [1] CRAN (R 3.5.3)
   shinyjs        1.0      2018-01-08 [1] CRAN (R 3.5.3)
   shinystan    * 2.5.0    2018-05-01 [1] CRAN (R 3.5.3)
   shinythemes    1.1.2    2018-11-06 [1] CRAN (R 3.5.3)
   StanHeaders  * 2.19.0   2019-09-07 [1] CRAN (R 3.5.3)
   stringi        1.4.3    2019-03-12 [1] CRAN (R 3.5.3)
   stringr        1.4.0    2019-02-10 [1] CRAN (R 3.5.3)
   testthat       2.2.1    2019-07-25 [1] CRAN (R 3.5.3)
   threejs        0.3.1    2017-08-13 [1] CRAN (R 3.5.3)
   tibble         2.1.3    2019-06-06 [1] CRAN (R 3.5.3)
   tidyr          0.8.3    2019-03-01 [1] CRAN (R 3.5.3)
   tidyselect     0.2.5    2018-10-11 [1] CRAN (R 3.5.3)
   TMB          * 1.7.15   2018-11-09 [1] CRAN (R 3.5.3)
   tmbstan      * 1.0.2    2019-05-18 [1] CRAN (R 3.5.3)
   usethis        1.5.1    2019-07-04 [1] CRAN (R 3.5.3)
   utf8           1.1.4    2018-05-24 [1] CRAN (R 3.5.3)
   vctrs          0.2.0    2019-07-05 [1] CRAN (R 3.5.3)
   viridisLite    0.3.0    2018-02-01 [1] CRAN (R 3.5.3)
   withr          2.1.2    2018-03-15 [1] CRAN (R 3.5.3)
   xfun           0.9      2019-08-21 [1] CRAN (R 3.5.3)
   xtable         1.8-4    2019-04-21 [1] CRAN (R 3.5.3)
   xts            0.11-2   2018-11-05 [1] CRAN (R 3.5.3)
   yaml           2.2.0    2018-07-25 [1] CRAN (R 3.5.3)
   zeallot        0.1.0    2018-01-28 [1] CRAN (R 3.5.3)
   zoo            1.8-6    2019-05-28 [1] CRAN (R 3.5.3)

About

Escape ring study to estimate length-based selectivity for a sablefish pot gear fishery.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

 
 
 

Contributors