DCNet

DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch

NeuralDBG

A simple demostration using a neural network + de Bruijn for small sequence assembly problem with noisy reads:

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
DBG1.dot		DBG1.dot
DBG1.svg		DBG1.svg
DBG2.dot		DBG2.dot
DBG2.svg		DBG2.svg
DCNet-LSTM-RNN-1.ipynb		DCNet-LSTM-RNN-1.ipynb
DCNet-LSTM-RNN-2.ipynb		DCNet-LSTM-RNN-2.ipynb
NeuralDBG.ipynb		NeuralDBG.ipynb
README.md		README.md