Issues

• Increase max column threshold for frontend table

  UX improvement
  cschlaffner/PROTzilla#474 · Filter by author jorisfu opened on Aug 18, 2026

• Reduce autosave overhead drastically

  technical enhancement
  cschlaffner/PROTzilla#473 · Filter by author jorisfu opened on Aug 5, 2026
  

• Dataframe Index column is lost when using disk I/O

  bug
  cschlaffner/PROTzilla#472 · Filter by author jorisfu opened on Aug 5, 2026

• BUG: Checkbox value synchronizing across steps

  bug
  cschlaffner/PROTzilla#470 · Filter by author AnnaPolensky opened on Aug 4, 2026
  

• Fix Enrichr GO organism options

  feature fix
  cschlaffner/PROTzilla#468 · Filter by author jorisfu opened on Jul 22, 2026
  

• Extensive Contaminant and Reverse Filtering

  cschlaffner/PROTzilla#466 · Filter by author hendraet opened on Jul 16, 2026

• Add option to use normalization method for log transformed data

  cschlaffner/PROTzilla#461 · Filter by author Elena-kal opened on Jul 8, 2026
  

• BUG: PTM Bar plot fails if no modifications are present

  bug
  cschlaffner/PROTzilla#458 · Filter by author hendraet opened on Jun 17, 2026

• BUG: off by one error in crosslink position calculation

  bug
  cschlaffner/PROTzilla#453 · Filter by author NeleRiediger opened on Jun 10, 2026
  

• BUG: Ultrawide tables fall back to NaN values instead of fallback table

  bug
  cschlaffner/PROTzilla#445 · Filter by author jorisfu opened on May 29, 2026
  

• 2 Download csv buttons (full and filtered)

  cschlaffner/PROTzilla#443 · Filter by author AnnaPolensky opened on May 27, 2026

• Allow abbreviated PTM identifiers in evidence

  feature fix
  cschlaffner/PROTzilla#438 · Filter by author tE3m opened on May 25, 2026
  1

  

• Integrate PTMs from evidence into conventional protein structure files

  feature enhancement
  cschlaffner/PROTzilla#437 · Filter by author tE3m opened on May 25, 2026

• Integrate PTMs from evidence into Alphafold predictions

  new feature
  cschlaffner/PROTzilla#436 · Filter by author tE3m opened on May 25, 2026
  

• MultiSelectFields cannot be properly loaded from runs/workflows

  cschlaffner/PROTzilla#432 · Filter by author hendraet opened on May 21, 2026

• Fix UniProt test

  cschlaffner/PROTzilla#427 · Filter by author NeleRiediger opened on May 19, 2026
  

• BUG: psm_df connection from example dataset import vanishes if run is loaded

  bug
  cschlaffner/PROTzilla#416 · Filter by author hendraet opened on May 13, 2026

• # TODO remove unused code

  todo
  cschlaffner/PROTzilla#414 · Filter by author NeleRiediger opened on May 12, 2026

• Text-based Input fields send multiple inputs

  bug
  cschlaffner/PROTzilla#398 · Filter by author tE3m opened on May 5, 2026

• Update README CI/CD badge to reflect branch-specific

  cschlaffner/PROTzilla#392 · Filter by author ferbsx opened on Apr 29, 2026

• BUG: false validation of Bar plot forGO enrichment analysis

  bug
  cschlaffner/PROTzilla#377 · Filter by author NeleRiediger opened on Apr 27, 2026
  

• Download for cif files

  new feature
  cschlaffner/PROTzilla#369 · Filter by author AnnaPolensky opened on Apr 22, 2026
  

• Add colorization for PTM sites

  feature enhancement
  cschlaffner/PROTzilla#363 · Filter by author AnnaPolensky opened on Apr 22, 2026
  

• Include PTMs in existing CIFs

  new feature
  cschlaffner/PROTzilla#361 · Filter by author AnnaPolensky opened on Apr 22, 2026
  

• MSFragger/FragPipe Peptide/Evidence Import

  hackathonnew feature
  cschlaffner/PROTzilla#354 · Filter by author jorisfu opened on Apr 17, 2026