docs: update documentation for CLI accuracy and supported agents

[yacosta738]

I have synchronized the documentation with the current state of the AgentSync codebase. This includes updating agent, skill, and technology counts in the README and technical reference, as well as refining the Agent Compatibility Matrix to include VS Code and accurate file locations for several assistants. I also standardized the documentation of CLI flags across all subcommands to match their implementation in src/main.rs.

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PR created automatically by Jules for task 496983832583212034 started by @yacosta738

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Reviewing files that changed from the base of the PR and between 88fd2bc and bf61810.

📒 Files selected for processing (3)

• README.md
• website/docs/src/content/docs/reference/cli.mdx
• website/docs/src/content/docs/reference/configuration.mdx

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