ExampleStudy

Example OHDSI study package for testing Arachne.

What it does

• Cohort: Type 2 diabetes (LEGEND-style definition in inst/cohorts/).
• Analysis: Incidence estimation via IncidencePrevalence
• Output: Summarised results exported to a folder; optional Shiny app to explore them.

How to run the study

1. Get the code
   Clone the repo or download and extract the source:

   git clone git@github.com:darwin-eu-dev/ExampleStudy.git
   cd ExampleStudy

   Or download the package as a ZIP and extract it.

2. Install the package (from the ExampleStudy directory):

   devtools::install()

3. Execute the study script
   Open extras/codeToRun.R, modify the connection information, output folder, and minCellCount. Then run the script.

Arachne

Use this package as a minimal, self-contained study when validating or testing Arachne workflows (study execution, result export, Shiny integration, etc.).