Thank you for your fantastic work! I've successfully run your open-source code for 3D reconstruction. However, after the reconstruction of the fetal brain, there are always some regions that are not of interest, while others are well-separated. Currently, I'm using the following parameters with nesvor reconstruct:
nesvor reconstruct
--input-stacks stack-1.nii.gz ... stack-N.nii.gz
--thicknesses ...
--output-volume volume.nii.gz
--output-resolution 0.8
--segmentation
--bias-field-correction
Could you please advise on what parameters I should set to improve the separation of the fetal brain regions and eliminate the unwanted areas?
Thank you for your fantastic work! I've successfully run your open-source code for 3D reconstruction. However, after the reconstruction of the fetal brain, there are always some regions that are not of interest, while others are well-separated. Currently, I'm using the following parameters with nesvor reconstruct:
nesvor reconstruct
--input-stacks stack-1.nii.gz ... stack-N.nii.gz
--thicknesses ...
--output-volume volume.nii.gz
--output-resolution 0.8
--segmentation
--bias-field-correction
Could you please advise on what parameters I should set to improve the separation of the fetal brain regions and eliminate the unwanted areas?