SPADE

Structural Proteomics Application Development Environment

sites.google.com/view/spade

Linux:

Here are instructions for setting up a good Python build on CentOS/RH.

Install SPADE

SPADE requires build-essential, python-tk, python-vtk, python-pmw, python-numpy, and python-scipy. I installed all those on linux mint with apt-get. Then install biopython with "sudo pip install biopython".

Launch SPADE

$ python SPADE.py

Launch MolecularViewer:

$ python MolecularViewer.py

Install AlignmentEditor

Close SPADE then cd into the Applications folder. Clone the AlignmentEditor github repo into a folder named AlignmentEditor. Then start SPADE.

Windows:

Windows installer here. This version has limited functionality.