This repository contains code associated with Hernández-Carrasco et al. manuscript presenting Generalised Dissimilarity Uniqueness Models (GDUM).

NOTE: An installation of the gdmmTMB R package is required to run the scripts in this repository. gdmmTMB can be installed from GitHub using:

devtools::install_github("dhercar/gdmmTMB")

Contents

• Simulation_study/Simulation_param_recover.R — performs the simulation study.
• Case-study/ — contains scripts:
  • conceptual_fig.R — recreates Fig. 1
  • CaseStudyMicrobial.R — Microbial communities along a pH gradient (case study 1)
  • CaseStudySW.R — Plant community change along environmental gradients (case study 2)