Use newer setuptools_scm version

.github/workflows/python.yml

@@ -14,7 +14,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest]
-        py: ["3.10", 3.9, 3.8]
+        py: ["3.11", "3.12", "3.13", "3.14"]
       fail-fast: false
 
     steps:
@@ -59,8 +59,10 @@ jobs:
           PYTHONDEVMODE: 1
 
       - name: Upload Python coverage to codecov
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v5
         with:
             flags: python
             fail_ci_if_error: true
             files: coverage.xml
+        env:
+            CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.readthedocs.yaml

@@ -2,9 +2,9 @@ version: 2
 
 # Set the version of Python and other tools you might need
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
-    python: "3.10"
+    python: "3.14"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

Makefile

@@ -5,39 +5,39 @@
 
 PYSOURCES=$(wildcard screed/*.py)
 TESTSOURCES=$(wildcard screed/tests/*.py)
-SOURCES=$(PYSOURCES) setup.py
+SOURCES=$(PYSOURCES)
 
 VERSION=$(shell git describe --tags --dirty | sed s/v//)
 all:
-	./setup.py build
+	python -m build .
 
 install: FORCE
-	./setup.py build install
+	pip install -e .
 
 install-dependencies: FORCE
 	pip install -e .[all]
 
 develop: FORCE
-	./setup.py develop
+	pip install -e .
 
 dist: dist/screed-$(VERSION).tar.gz
 
 dist/screed-$(VERSION).tar.gz: $(SOURCES)
-	./setup.py sdist
+	python -m build --sdist .
 
 clean: FORCE
-	./setup.py clean --all || true
+	pip uninstall screed || true
 	rm -rf build/
 	rm -rf coverage-debug .coverage coverage.xml
 	rm -rf doc/_build
 	rm -rf .eggs/ *.egg-info/ .cache/ __pycache__/ *.pyc */*.pyc */*/*.pyc
 
 pep8: $(PYSOURCES) $(TESTSOURCES)
-	pycodestyle --exclude=_version.py setup.py screed/
+	pycodestyle --exclude=_version.py screed/
 
 pylint: FORCE
 	pylint --msg-template="{path}:{line}: [{msg_id}({symbol}), {obj}] {msg}" \
-		setup.py screed || true
+		screed || true
 
 doc: FORCE
 	cd doc && make html

pyproject.toml

@@ -1,7 +1,7 @@
 [build-system]
 requires = [
     "setuptools >= 48",
-    "setuptools_scm[toml] >= 4, <6",
+    "setuptools_scm[toml] >= 9, <10",
     "setuptools_scm_git_archive",
     "wheel >= 0.29.0",
 ]
@@ -10,3 +10,58 @@ build-backend = 'setuptools.build_meta'
 [tool.setuptools_scm]
 write_to = "screed/version.py"
 git_describe_command = "git describe --dirty --tags --long --match v* --first-parent"
+
+[project]
+name = "screed"
+description = "a Python library for loading FASTA and FASTQ sequences"
+readme = "README.md"
+license = "BSD-3-Clause"
+license-files = [ "doc/LICENSE.rst" ]
+requires-python = ">=3.11"
+dynamic = [ "version" ]
+
+authors = [
+  { name = "Alex Nolley" },
+  { name = "C. Titus Brown" },
+]
+
+maintainers = [
+  { name = "C. Titus Brown", email = "titus@idyll.org" },
+  { name = "Luiz Irber", email="luiz@sourmash.bio" },
+]
+
+classifiers = [
+  "Development Status :: 5 - Production/Stable",
+  "Environment :: Console",
+  "Environment :: MacOS X",
+  "Intended Audience :: Science/Research",
+  "Natural Language :: English",
+  "Operating System :: POSIX :: Linux",
+  "Operating System :: MacOS :: MacOS X",
+  "Programming Language :: Python :: 3.14",
+  "Programming Language :: Python :: 3.13",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.11",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
+]
+
+[project.urls]
+"Homepage" = "https://github.com/dib-lab/screed"
+"Documentation" = "https://screed.readthedocs.io/"
+"Source" = "https://github.com/dib-lab/screed"
+"Tracker" = "https://github.com/dib-lab/screed/issues"
+"CI" = "https://github.com/dib-lab/screed/actions"
+
+[project.scripts]
+"screed" = "screed.__main__:main"
+
+[project.optional-dependencies]
+test = [
+    "pytest >= 6.2.2",
+    "pycodestyle",
+    "pytest-cov",
+]
+all = ["screed[test]"]
+
+[tool.setuptools]
+packages = ["screed"]

tox.ini

@@ -1,5 +1,5 @@
 [tox]
-envlist = py38, py39, py310
+envlist = py311, py312, py313, py314
 minversion = 3.12
 isolated_build = true
 skip_missing_interpreters = true
@@ -26,6 +26,7 @@ deps =
 
 [gh-actions]
 python =
-  3.8: py38
-  3.9: py39
-  3.10: py310
+  3.11: py311
+  3.12: py312
+  3.13: py313
+  3.14: py314