Didier Brassard 2025-01-23
This repository includes the material to reproduce the manuscript of: Estimating the Effect of Adhering to the Recommendations of the 2019 Canada’s Food Guide on Health Outcomes in Older Adults: Protocol for a Target Trial Emulation
The raw data used for this project were obtained from Health Canada (2022).
- JMIR Research Protocol*: official article
- medRxiv: Pre-print version of the study
- GitHub: Main article (code, text, figures and tables)
- GitHub: Supplemental material
*Suggested citation: Brassard D, Presse N, Chevalier S. Estimating the Effect of Adhering to the Recommendations of the 2019 Canada’s Food Guide on Health Outcomes in Older Adults: Protocol for a Target Trial Emulation. JMIR Res Protoc 2025;14:e65182. doi:10.2196/65182
| Description of R and QMD codes | |||
|---|---|---|---|
| Name | Description | Time | Link |
| 1.0-Data_preparation.R | Raw data cleaning and processing to generate Health Canada diet simulation data | <1min | Open code |
| 9.1-Manuscript.qmd | Quarto document used to generate the text, figures and tables of the protocol | <1min | Open code |
| 9.2-Supplement.qmd | Quarto document used to generate the supplemental material of the protocol | <1min | Open code |
This project is supported by a Canadian Institute of Health Research Fellowship to Didier Brassard (MFE-181852).
The general set-up and folder tree of this project is based on work by Figueiredo, Scherer, and Cabral (2022).
Figueiredo, L., C. Scherer, and J. S. Cabral. 2022. “A Simple Kit to Use Computational Notebooks for More Openness, Reproducibility, and Productivity in Research.” Journal Article. PLoS Comput Biol 18 (9): e1010356. https://doi.org/10.1371/journal.pcbi.1010356.
Health Canada. 2022. “Simulated Composite Diets.” Government Document. Open Government Portal. https://open.canada.ca/data/en/dataset/0490749d-b0b0-410a-9577-a903c6cec2be.
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[1] "2025-01-23 10:35:00 EST"
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.7.1
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: America/Toronto
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggtext_0.1.2 ggflowchart_1.0.0 ggplot2_3.5.1 gt_0.11.1
[5] purrr_1.0.2 tidyr_1.3.1 dplyr_1.1.4
loaded via a namespace (and not attached):
[1] gtable_0.3.6 jsonlite_1.8.9 compiler_4.3.1 tidyselect_1.2.1
[5] Rcpp_1.0.13-1 xml2_1.3.6 scales_1.3.0 yaml_2.3.10
[9] fastmap_1.2.0 here_1.0.1 R6_2.5.1 commonmark_1.9.2
[13] generics_0.1.3 knitr_1.49 tibble_3.2.1 rprojroot_2.0.4
[17] munsell_0.5.1 pillar_1.9.0 rlang_1.1.4 utf8_1.2.4
[21] xfun_0.49 sass_0.4.9 cli_3.6.3 withr_3.0.2
[25] magrittr_2.0.3 digest_0.6.37 grid_4.3.1 gridtext_0.1.5
[29] rstudioapi_0.17.1 markdown_1.13 base64enc_0.1-3 lifecycle_1.0.4
[33] vctrs_0.6.5 evaluate_1.0.1 glue_1.8.0 fansi_1.0.6
[37] colorspace_2.1-1 rmarkdown_2.29 tools_4.3.1 pkgconfig_2.0.3
[41] htmltools_0.5.8.1