feat: MLflow 3.x upgrade, CI hardening, and 80% unit test coverage - #3

Merged

dimakis merged 34 commits into

mainfrom

fix/ci-dev-deps

Feb 9, 2026

Commits on Feb 9, 2026

fix(build): move dev deps from optional-dependencies to dependency-groups

dimakis
and
cursoragent
committed
b815322
fix(build): move dev deps to dependency-groups and fix all lint errors

dimakis
and
cursoragent
committed
fc8ca47
ci: make mypy non-blocking until pre-existing type errors are resolved

dimakis
and
cursoragent
committed
6ecc5ca
fix(types): resolve mypy strict-mode errors and establish per-module overrides

dimakis
and
cursoragent
committed
1edce7c
ci: make mypy a hard gate now that all errors are resolved

dimakis
and
cursoragent
committed
ccde1cd
fix(security): upgrade mlflow 2.x → 3.x to resolve 3 high-severity CVEs

dimakis
and
cursoragent
committed
0ea3068
feat(tracing): add MLflow 3.x feedback, expectation, and trace search utilities

dimakis
and
cursoragent
committed
6f239ee
feat(flow-grades): bridge flow grade feedback to MLflow 3.x assessments

dimakis
and
cursoragent
committed
f7f17ae
feat(proposals): bridge approval/rejection to MLflow 3.x assessments

dimakis
and
cursoragent
committed
c1e459f
feat(tracing): add custom MLflow 3.x scorers for agent quality evaluation

dimakis
and
cursoragent
committed
794a7bf
feat(cli): add 'aether evaluate' command for MLflow 3.x trace evaluation

dimakis
and
cursoragent
committed
779473e
feat(scheduler): add nightly trace evaluation job with MLflow 3.x scorers

dimakis
and
cursoragent
committed
6f0f1a0
feat(api): add /evaluations endpoints for MLflow 3.x scorer results

dimakis
and
cursoragent
committed
8fd3bb4
refactor(tracing): remove MLflow v2 fallback code, simplify for v3.5+

dimakis
and
cursoragent
committed
4a82e8c
fix: resolve all CI blockers (bandit, failing tests, api_host default)

dimakis
and
cursoragent
committed
84b1462
fix(api): remove invalid Agent kwargs and fix slowapi parameter collision

dimakis
and
cursoragent
committed
0dc035a
test(api): add unit tests for system, chat, proposals, ha_registry routes

dimakis
and
cursoragent
committed
75e01ea
test: add batch 1B/2/3 — routes, CLI, and DAL unit tests (283 new tests)

dimakis
and
cursoragent
committed
badb1a3
test: achieve 80% unit test coverage (2121 tests)

dimakis
and
cursoragent
committed
9bb5765
style: fix ruff lint errors (unused imports, import sorting, formatting)

dimakis
and
cursoragent
committed
225dc0d
test: fix discover help test and add coverage buffer tests

dimakis
and
cursoragent
committed
99b2429
fix(test): avoid CodeQL url-substring-sanitization false positives

dimakis
and
cursoragent
committed
1cc522b
fix(storage): remove duplicate google_sub index in UserProfile

dimakis
and
cursoragent
committed
620ecca
fix(storage): remove duplicate domain index in HAEntity

dimakis
and
cursoragent
committed
9ea7603
fix(test): resolve integration test event loop and mock issues

dimakis
and
cursoragent
committed
6d96555
fix(test): use SQLAlchemy nested transaction pattern for test isolation

dimakis
and
cursoragent
committed
cf0aa05
fix(test): remove invalid join_transaction_in_progress kwarg

dimakis
and
cursoragent
committed
d22fb57
fix(test): add expire_on_commit=False to integration session fixture

dimakis
and
cursoragent
committed
26542b3
fix(test): auto-detect Podman runtime for integration tests

dimakis
and
cursoragent
committed
45fd332
ci: skip per-step coverage threshold for integration and E2E tests

dimakis
and
cursoragent
committed
700d7d8
style(test): fix ruff lint errors in container runtime detection

dimakis
and
cursoragent
committed
30d7ec8
ci(make): add format-check to make check, fix conftest formatting

dimakis
and
cursoragent
committed
2db7c16
ci: upload .coverage binary files for cross-job coverage combine

dimakis
and
cursoragent
committed
47f2b5b
ci: add include-hidden-files to coverage artifact uploads

dimakis
and
cursoragent
committed
8dea1d5

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feat: MLflow 3.x upgrade, CI hardening, and 80% unit test coverage - #3

feat: MLflow 3.x upgrade, CI hardening, and 80% unit test coverage#3
dimakis merged 34 commits into
mainfrom
fix/ci-dev-deps

Commits on Feb 9, 2026

fix(build): move dev deps from optional-dependencies to dependency-groups

fix(build): move dev deps to dependency-groups and fix all lint errors

ci: make mypy non-blocking until pre-existing type errors are resolved

fix(types): resolve mypy strict-mode errors and establish per-module overrides

ci: make mypy a hard gate now that all errors are resolved

fix(security): upgrade mlflow 2.x → 3.x to resolve 3 high-severity CVEs

feat(tracing): add MLflow 3.x feedback, expectation, and trace search utilities

feat(flow-grades): bridge flow grade feedback to MLflow 3.x assessments

feat(proposals): bridge approval/rejection to MLflow 3.x assessments

feat(tracing): add custom MLflow 3.x scorers for agent quality evaluation

feat(cli): add 'aether evaluate' command for MLflow 3.x trace evaluation

feat(scheduler): add nightly trace evaluation job with MLflow 3.x scorers

feat(api): add /evaluations endpoints for MLflow 3.x scorer results

refactor(tracing): remove MLflow v2 fallback code, simplify for v3.5+

fix: resolve all CI blockers (bandit, failing tests, api_host default)

fix(api): remove invalid Agent kwargs and fix slowapi parameter collision

test(api): add unit tests for system, chat, proposals, ha_registry routes

test: add batch 1B/2/3 — routes, CLI, and DAL unit tests (283 new tests)

test: achieve 80% unit test coverage (2121 tests)

style: fix ruff lint errors (unused imports, import sorting, formatting)

test: fix discover help test and add coverage buffer tests

fix(test): avoid CodeQL url-substring-sanitization false positives

fix(storage): remove duplicate google_sub index in UserProfile

fix(storage): remove duplicate domain index in HAEntity

fix(test): resolve integration test event loop and mock issues

fix(test): use SQLAlchemy nested transaction pattern for test isolation

fix(test): remove invalid join_transaction_in_progress kwarg

fix(test): add expire_on_commit=False to integration session fixture

fix(test): auto-detect Podman runtime for integration tests

ci: skip per-step coverage threshold for integration and E2E tests

style(test): fix ruff lint errors in container runtime detection

ci(make): add format-check to make check, fix conftest formatting

ci: upload .coverage binary files for cross-job coverage combine

ci: add include-hidden-files to coverage artifact uploads