dj-sciops · judewerth · Feb 27, 2026 · Feb 28, 2026 · Mar 23, 2026 · Mar 23, 2026
diff --git a/notebooks/ANALYZE_single_organoid.ipynb b/notebooks/ANALYZE_single_organoid.ipynb
diff --git a/notebooks/ANALYZE_single_session.ipynb b/notebooks/ANALYZE_single_session.ipynb
diff --git a/notebooks/CREATE_impedance_measurements.ipynb b/notebooks/CREATE_impedance_measurements.ipynb
diff --git a/notebooks/CREATE_new_MUA_session.ipynb b/notebooks/CREATE_new_MUA_session.ipynb
diff --git a/notebooks/CREATE_new_burst_session.ipynb b/notebooks/CREATE_new_burst_session.ipynb
diff --git a/notebooks/CREATE_new_coupling_session.ipynb b/notebooks/CREATE_new_coupling_session.ipynb
diff --git a/notebooks/CREATE_new_culture_session.ipynb b/notebooks/CREATE_new_culture_session.ipynb
diff --git a/notebooks/CREATE_new_fooof_session.ipynb b/notebooks/CREATE_new_fooof_session.ipynb
diff --git a/notebooks/CREATE_new_frame_analysis.ipynb b/notebooks/CREATE_new_frame_analysis.ipynb
diff --git a/notebooks/CREATE_new_frame_session.ipynb b/notebooks/CREATE_new_frame_session.ipynb
diff --git a/notebooks/CREATE_new_trace_plot.ipynb b/notebooks/CREATE_new_trace_plot.ipynb
diff --git a/notebooks/EXPLORE_frame_analysis.ipynb b/notebooks/EXPLORE_frame_analysis.ipynb
diff --git a/notebooks/EXPLORE_single_session.ipynb b/notebooks/EXPLORE_single_session.ipynb
diff --git a/notebooks/EXPLORE_spike_sorting.ipynb b/notebooks/EXPLORE_spike_sorting.ipynb
diff --git a/pyproject.toml b/pyproject.toml
@@ -43,6 +43,12 @@ dependencies = [
     # Patch-clamp dependencies (pyabf replaces stfio, ipfx replaces AllenSDK)
     "pyabf>=2.3.0",
     "ipfx>=1.0.0",
+    "bottleneck>=1.5.0",
+    "neo>=0.14.4",
+    "quantities>=0.16.4",
+    "elephant>=1.1.1",
+    "specparam>=2.0.0",
+    "tensorpac>=0.6.5",
 ]
 
 [project.optional-dependencies]