iGEM

An R Shiny application to summarize and visualize gene-environment interaction (GEI) results from the GEM, REGEM, and METAGEM software programs.

1. Requirements

• R (>= 3.5.0)
• bslib (>= 0.5.0)
• data.table
• DT
• ggplot2
• kit
• plyr
• shiny
• shinyBS
• shinycssloaders
• shinyjs

2. Usage

1. Run iGEM locally

It is recommended to run iGEM locally for large file sizes (> 500 MB).

shiny::runApp("iGEM")

2. Using the web

Alternatively, iGEM can be accessed at shinyapps.io.

Note

iGEM is deployed for free at shinyapps.io. It allows up to 1 GB of memory usage. Therefore, a large file will not be uploaded and/or summarized successfully. In this case, please run iGEM locally.

3. Overview

Figure 1. Overview of the iGEM application