Mitochondrial impacts on the sex-biased transcriptome in mitonuclear hybrids.
sbe.R - Analysis of sex-biased expression in mitonuclear hybrids.
randDC.R - Analysis of transcriptome-wide differential coexpression using randomly sampled gene sets.
MEGENA_hgt.R - Sub-network analysis of mitochondrial-induced differential correlation. Hypergeometric test measures enrichment of differential correlation classes within each network module.
subnet.stats.R - Calculate topological statistics for modules of interest. To be used in downstream multivariate analysis.