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refactor: remove the unused leviosam2 chain-lift rules #70

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Merged
mrvollger merged 1 commit into from
Aug 14, 2026
+0 −112
Merged

refactor: remove the unused leviosam2 chain-lift rules #70

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10 changes: 0 additions & 10 deletions workflow/Snakefile
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Original file line number Diff line number Diff line change
Expand Up @@ -74,11 +74,6 @@ bw_types = ["log_FDR"] # "score", "FDR",
el_types = ["fire", "linker", "nucleosome"]


# DSA options
DSA_CHAIN = config.get("chain", None)
DSA = DSA_CHAIN is not None
LEVIO_EXE = config.get("levio_exe", "leviosam2")

# developer options
FT_EXE = config.get("ft_exe", "ft")
if FT_EXE != "ft":
Expand All @@ -104,11 +99,6 @@ include: "rules/decorated-reads.smk"
include: "rules/track-hub.smk"


if DSA:

include: "rules/levio.smk"


wildcard_constraints:
chrom="|".join(get_chroms()),
call="|".join(["msp", "m6a"]),
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102 changes: 0 additions & 102 deletions workflow/rules/levio.smk
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