Avoid disabled agent instrumentation#905
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Fixes #847.
Fixes #743.
Summary
runand IntelliJ-styleJavaExecexecutions without-PagentTesting
JAVA_HOME=/home/jovan/.sdkman/candidates/java/17.0.12-graal ./gradlew :native-gradle-plugin:functionalTest --tests 'org.graalvm.buildtools.gradle.JavaApplicationFunctionalTest.does not make JavaExec tasks up-to-date when the agent is disabled'\n-JAVA_HOME=/home/jovan/.sdkman/candidates/java/17.0.12-graal GRAALVM_HOME=/home/jovan/.sdkman/candidates/java/25.0.2-graal ./gradlew :native-gradle-plugin:functionalTest --tests 'org.graalvm.buildtools.gradle.JavaApplicationWithAgentFunctionalTest.agent instruments run task'\n-JAVA_HOME=/home/jovan/.sdkman/candidates/java/17.0.12-graal GRAALVM_HOME=/home/jovan/.sdkman/candidates/java/25.0.2-graal ./gradlew :native-gradle-plugin:functionalTest --tests 'org.graalvm.buildtools.gradle.JavaApplicationWithAgentFunctionalTest.supports configuration cache'\n-JAVA_HOME=/home/jovan/.sdkman/candidates/java/17.0.12-graal ./gradlew :native-gradle-plugin:checkstyleMain