Requirements

• bat

Command Catalogue

File and Directory Operations

Command	Description
batt	Smart file viewer using bat with fd and fzf
body	View file content without header
clip-save	Save clipboard content to file
corner	Extract corners/edges from files
csvfzfcut	Interactive CSV column selection with fzf
dir-depth	Show directory depth/structure
equalify	Make files equal/identical
extract	Universal archive extraction
find-references	Find file references
find_docs	Find documentation files
find_imgs	Find image files
header	Show file headers
headd	Advanced head command
imgcat	Display images in terminal
imgsearch	Search for images
itemify	Convert to list items
listify	Create lists from input
ls-now	List files with current timestamp
nums	Extract/work with numbers
openn	Smart file opener
ppath	Print paths in PATH
preview	File previewer
preview-viewer	Advanced file preview
quotify	Add quotes to text
shreddir	Securely delete directories
strip_color	Remove ANSI color codes
tablify	Convert to table format
tree2	Enhanced tree command
view_row	View specific row in files
zhead	Compressed file head

Git Operations

Command	Description
git-branchname	Get current branch name
git-browse2	Open repository in browser
git-delouse	Clean up git repository
git-deps	Show git dependencies
git-diff-files	Show diff for specific files
git-diff-fzf	Interactive git diff with fzf
git-diff-unpushed	Show unpushed changes
git-diff2	Enhanced git diff
git-edit-changed-files	Edit changed files
git-edit-commits	Edit commit messages
git-fixup	Create fixup commits
git-grep-branch-head	Grep at branch head
git-log-unpushed	Show unpushed commits
git-ls-contributed	List contributed files
git-ls-files-by-time	List files by timestamp
git-ls-timestamped-from-repo	Timestamped file listing
git-ls-unpushed	List unpushed changes
git-mkprj	Create new git project
git-personal	Personal git operations
git-pr-fzf	Interactive PR selection
git-preview-unstaged	Preview unstaged changes
git-preview-unstaged2	Enhanced unstaged preview
git-previous	Go to previous commit
git-rebase-unpushed	Rebase unpushed commits
git-recent	Show recent commits
git-recover	Recover git data
git-search	Search in git history
git-search-commit	Search specific commits
git-sha	Get commit SHA
git-short-hash-head	Short hash of HEAD
git-sparse	Sparse checkout operations
git-status2	Enhanced git status
git-tagg	Git tagging operations
git-to-git-url	Convert to git URL
git-up	Update git repository
git-update-gitignore	Update .gitignore
git-worktreefy	Git worktree operations
git_blameable.sh	Find blameable lines
git_blameable_by_commits.sh	Blame by commits
git_changed_files.sh	List changed files
git_status_improved	Improved git status
gitig	Git ignore operations
gopen	Open git files
gshared	Git shared operations
is_git_dir	Check if directory is git repo
watch-git-standup	Watch git standup

Task Management & Productivity

Command	Description
daily	Daily task management
doing-tmux	Track what you're doing in tmux
history-extract-commands	Extract commands from history
history-note	Add notes to history
history-pid-dirs	Track PID directories
history-today	Today's history
htoday	Historical today
note	Take notes
remember	Remember commands/info
remember-files	Remember file locations
show_todo.sh	Display todo items
since	Show time since event
todo_today	Today's todos

Todoist Integration

Command	Description
todoist-active	Show active Todoist tasks
todoist-add-interactive	Add tasks interactively
todoist-close	Close Todoist tasks
todoist-completed	Show completed tasks
todoist-grep	Search Todoist tasks
todoist-inbox	Show inbox items
todoist-ls-all-active	List all active tasks
todoist-ls-done-today	List today's completed tasks
todoist-ls-links	List task links
todoist-overdue	Show overdue tasks
todoist-recurring	Show recurring tasks
todoist-time-left.py	Calculate time left
todoist-today	Today's Todoist tasks
todoist-vimwiki	Todoist-Vimwiki integration
todoist-work	Work-related tasks

VimWiki Operations

Command	Description
vimwiki-list-dangling-notes	Find dangling notes
vimwiki-list-notes-created-today	Today's new notes
vimwiki-open-today	Open today's notes
vimwiki-tags	Manage VimWiki tags
vwiki	VimWiki operations
vwiki-search	Search VimWiki
vwiki-tags-find	Find by tags
vwiki-today	Today's VimWiki

Text Processing & Search

Command	Description
alias-find	Find command aliases
bashrc-find	Search bashrc files
define	Look up definitions
dic	Dictionary operations
escape_spanish	Escape Spanish characters
grep-text	Text search operations
rg2	Enhanced ripgrep
rgf	Ripgrep for files
rgm	Ripgrep with modifications
rgtm	Ripgrep time-based
rgtodo	Search for TODOs
rgtp	Ripgrep with patterns
rgtr	Ripgrep recursive
rgv	Ripgrep verbose
search_alias	Search command aliases
strip.pl	Strip text using Perl
thesaurus	Thesaurus lookup
trans	Translation operations

System & Environment

Command	Description
add-path	Add directories to PATH
ansi_colors.sh	ANSI color utilities
bopen	Smart file/URL opener
code	Code editor launcher
corner	System corner operations
ctoday	Calendar today
ctx	Context operations
cwhich	Enhanced which command
date_epoch_to_human.sh	Convert epoch to human time
delete_screenshots.sh	Clean up screenshots
exa-sort-created	Sort by creation time
find_linux_version	Detect Linux version
find_ttys	Find TTY devices
generate-random-hex	Generate random hex values
launch_emacs.sh	Launch Emacs
os-version	Show OS version
print-ps-number-from-port	Get process from port
pyenv-python-version	Python version info
static_hash.sh	Generate static hashes
status-power.sh	Power status info
terms	Terminal operations
time-pst	PST time operations
time_left.py	Calculate remaining time
time_left_decorate	Decorated time display
timezone-switch	Switch timezones
versions	Show version info

Tmux & Session Management

Command	Description
doing-tmux	Track activity in tmux
ftpane.sh	Tmux pane operations
ftpane2.sh	Enhanced pane operations
kitty-switch	Switch kitty sessions
list_tmuxp_projects	List tmuxp projects
toggl-start	Start time tracking
toggl-tmux	Tmux-Toggl integration

File Tagging & Organization

Command	Description
tmsu-index	Index files with TMSU
tmsu-list-all-tags	List all TMSU tags
tmsu-list-dirs	List tagged directories
tmsu-open	Open tagged files
tmsu-open-typora	Open in Typora
tmsu-reindex	Reindex TMSU database
tmsu-search	Search tagged files
tmsu-tags-to-files	Map tags to files

Development & Programming

Command	Description
conda-cleaner.py	Clean conda environments
conda-on	Activate conda environment
construct_call_graph.py	Generate call graphs
graph_dep	Graph dependencies
graph_funcs	Graph functions
install-pyls	Install Python language server
mamba-env-update	Update mamba environment
mamba-this	Mamba operations
python-decorate-pysnoop	Python debugging decorator
r-package-version	R package version info
r-ver	R version management
render_rmd	Render R Markdown
renv	R environment management
rhelp	R help system
rmd-dirty	Check R Markdown status
rproj	R project operations
test-r-file	Test R files
vcf-header-describe	Describe VCF headers

Workflow & Bioinformatics

Command	Description
wdl-dx-compile	Compile WDL for DNAnexus
wdl-graph	Generate WDL workflow graphs
wdl-inputs	Manage WDL inputs
wdl-linter	Lint WDL files
wdl-run	Run WDL workflows

DNAnexus Integration

Command	Description
dx-fzf	DNAnexus with fzf
dx-prj	DNAnexus project operations
dnanexus/dx_query_owner.sh	Query DNAnexus ownership

Cluster Computing

Command	Description
qacct_json.py	Job accounting in JSON
qdel-all	Delete all jobs
qlist	List cluster jobs
qstat-cluster-usage	Cluster usage statistics
qstat-monitor-logs	Monitor job logs
qstat-running	Show running jobs
qsub-describe-desc	Describe job descriptions
qsub-describe-duration	Job duration info
qsub-describe-state	Job state descriptions
qsub-describe-time	Job timing info
qsub-doc	Job documentation
qsub-find-pair	Find job pairs
qsub-list-associated	List associated jobs
qsub-list-experiments	List experiments
qsub-list-finished-job	List finished jobs
qsub-list-logs	List job logs
qsub-list-outputfile	List output files
qsub-summaries	Job summaries

Text Editors & IDE

Command	Description
tagbar_rmarkdown.py	Tagbar for R Markdown
tagbar_vimwiki.py	Tagbar for VimWiki
typora	Typora editor launcher
vimm	Vim operations
vq	Quick vim operations
vss	Vim session management
vt	Vim with terminal
vtoday	Today's vim files
vtodo	Vim todo operations
vv	Enhanced vim
vwhich	Vim which command

Media & File Conversion

Command	Description
gif-to-png.py	Convert GIF to PNG
heic-to-jpeg	Convert HEIC to JPEG
md2org	Convert Markdown to Org
pdfcat	Concatenate PDF files
pdf_opener	Smart PDF opener

Finance & Accounting

Command	Description
hledger-cleared.sh	Show cleared transactions
hledger2	Enhanced hledger operations

Web & URL Operations

Command	Description
fzf-url-open	Open URLs with fzf
hn-to-md.py	Convert Hacker News to Markdown
news	News operations
summarize-hn-comments	Summarize HN comments
wn-fzf	WordNet with fzf
wn-fzf-syn	WordNet synonyms with fzf
zoom_summary.sh	Summarize Zoom recordings

Jira Integration

Command	Description
jira-edit-fzf	Edit Jira tickets with fzf
jira-mine-viewer	View your Jira tickets
jql	Jira Query Language operations

Miscellaneous Utilities

Command	Description
catt	Enhanced cat command
gpg-forget	Clear GPG cache
lf	File operations
ls-prj	List projects
magic_cafe.R	R magic operations
make_report	Generate reports
mdly	Markdown operations
memory.py	Memory usage analysis
obsi	Obsidian operations
oo	Quick operations
org	Org-mode operations
papers	Academic paper management
readme	open readme
rg2	Enhanced ripgrep
rpbcopy	Remote pbcopy
selena.R	R analysis script
tb	Table operations