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Centralize "Split" File Path Generation#229

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tmooney wants to merge 24 commits into
griffithlab:developfrom
tmooney:centralize_split_file_path_generation
Open

Centralize "Split" File Path Generation#229
tmooney wants to merge 24 commits into
griffithlab:developfrom
tmooney:centralize_split_file_path_generation

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@tmooney tmooney commented Nov 15, 2016

  • This PR should not affect the output of the pipelines. This was mostly an excuse to practice editing some Python code. 😄
  • I wasn't sure whether or not to replace the fasta_chunk variable used in each of the status messages. It might simplify the code a little by removing a variable.

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+1. I could go either way with replacing the fasta_chunk variable.

Glad to see a PR from someone that isn't me. There is certainly a lot of room for improvement in this code.

@tmooney tmooney force-pushed the centralize_split_file_path_generation branch from fc2dd34 to b4a7934 Compare November 21, 2016 15:45
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tmooney commented Nov 21, 2016

I've rebased this to resolve the conflicts with #200.

@susannasiebert susannasiebert force-pushed the develop branch 2 times, most recently from 8e5b202 to 935788e Compare December 1, 2016 19:58
@tmooney tmooney force-pushed the centralize_split_file_path_generation branch from b4a7934 to 47a031d Compare December 1, 2016 22:47
@tmooney tmooney force-pushed the centralize_split_file_path_generation branch from 47a031d to 26ea758 Compare February 7, 2017 15:46
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tmooney commented Feb 7, 2017

I've rebased this again to address accumulated conflicts and added 3ceb7c7.

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