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docs(paper): align to standard JOSS format (sections, figure ref, length) - #64

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heidihelena merged 1 commit into
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Jul 15, 2026
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docs(paper): align to standard JOSS format (sections, figure ref, length)#64
heidihelena merged 1 commit into
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claude/jolly-mccarthy-wm4uao

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Why

The paper's structure diverged from how JOSS papers are actually published. This aligns it.

Changes

Section structure — now matches the JOSS convention (Summary + Statement of need required, then free-form):

  • Removed Research impact statement (not a JOSS section) — folded its runnable-demos / baselines / availability note into Statement of need.
  • Removed the standalone AI usage disclosure section — folded it (concisely) into Acknowledgements, where JOSS papers put such notes.
  • Final sections: SummaryStatement of needState of the fieldSoftware designExampleAcknowledgementsReferences.

Figures / references

  • The permutation-null figure is now cross-referenced in the text with \autoref{fig:permnull} (it previously only carried a \label), matching JOSS's figure convention.

Length / content

  • Body trimmed ~1320 → ~1218 words (removed the two non-JOSS sections; tightened the federated paragraph). Kept the reproducible-evaluation framing and all substantive content (model backends, claims gate, federated statistics, governance).

Validation

  • All 13 citation keys resolve against paper.bib.
  • Structure verified; figure \label + \autoref both present.

🤖 Generated with Claude Code


Generated by Claude Code

Match published JOSS structure: drop the non-JOSS 'Research impact statement'
(fold its runnable-demos/availability note into Statement of need) and the
standalone 'AI usage disclosure' (fold into Acknowledgements); cross-reference
the permutation-null figure with \autoref{fig:permnull}; tighten the federated
paragraph. Sections are now Summary, Statement of need, State of the field,
Software design, Example, Acknowledgements, References. All citation keys resolve.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_0149fLyfQuAaxNRfoPGoyf2x
@heidihelena
heidihelena marked this pull request as ready for review July 15, 2026 14:49
@heidihelena
heidihelena merged commit 103cdea into main Jul 15, 2026
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@heidihelena
heidihelena deleted the claude/jolly-mccarthy-wm4uao branch July 15, 2026 14:50
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2 participants