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Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: Starstruck

Achievements

Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: Starstruck

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@BDD-G

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hiyama341/README.md

Hi!

I am a postdoctoral researcher at DTU Bioengineering, working at the intersection of synthetic biology, lab automation, and computational strain engineering.

I like building tools that make biological engineering more reproducible: literate protocols, robot-ready workflows, and software that helps researchers move from experimental design to execution.

I currently work in the IBIS initiative at DTU, where I develop automation workflows for biofertilizer research and microbial strain development.

Current focus

  • Literate programming for reproducible biological protocols
  • Opentrons and liquid-handler automation for bacterial and fungal workflows
  • Computational tools for strain engineering and experimental design

Featured repositories

StreptoCAD
Automating genome engineering design in Streptomyces.

teemi
Literate programming tools for high-throughput strain engineering.

DTU Synbio Lab Automation
Opentrons protocols, robot guides, and LLM guidelines for turning liquid-handler workflows into reproducible automation.

Email: luclev@dtu.dk

Pinned Loading

  1. teemi teemi Public

    teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python plat…

    Jupyter Notebook 46 3

  2. streptocad streptocad Public

    StreptoCAD is an open-source toolbox that automates the design of genome engineering strategies in Streptomyces. It supports CRISPR-based workflows, generating primers, guide sequences, and plasmid…

    Jupyter Notebook 2

  3. DALSA-Lab/dtu_synbio_data_science_template DALSA-Lab/dtu_synbio_data_science_template Public template

    Jupyter Notebook 2

  4. DALSA-Lab/dtu_synbio_lab_automation DALSA-Lab/dtu_synbio_lab_automation Public template

    Jupyter Notebook