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fix issue #61 #62

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fix issue #61 #62

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18 changes: 16 additions & 2 deletions compleasm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -211,10 +211,21 @@ def download_placement(self):
for strain in self.placement_description.keys():
date, expected_hash, category = self.placement_description[strain]
if strain.startswith("supermatrix"):
prefix, aln, version, sufix = strain.split(".")
try:
prefix, aln, version, sufix = strain.split(".")
except ValueError:
print(strain)
prefix, aln, version, version2, sufix = strain.split(".")
version = version + "." + version2

download_file_name = "{}.{}.{}.{}.{}.tar.gz".format(prefix, aln, version, date, sufix)
else:
prefix, version, sufix = strain.split(".")
try:
prefix, version, sufix = strain.split(".")
except ValueError:
print(strain)
prefix, version, version2, sufix = strain.split(".")
version = version + "." + version2
download_file_name = "{}.{}.{}.{}.tar.gz".format(prefix, version, date, sufix)

if "eukaryota" not in download_file_name:
Expand Down Expand Up @@ -1658,6 +1669,9 @@ def Run(self):
lineage = "eukaryota_{}".format(self.odb)
else:
lineage = self.lineage
if lineage.startswith("lineage"):
print("i knew it fuck you")
exit(1)
download_lineage_start_time = time.time()
self.downloader.download_lineage(lineage, self.odb)
download_lineage_end_time = time.time()
Expand Down