Skip to content

modified ometiff_second_stitching.cwl and run_cytokit.cwl in steps folder #51

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
nikhilyerra wants to merge 1 commit into
base: main
Choose a base branch
from
+5 −4
Open

modified ometiff_second_stitching.cwl and run_cytokit.cwl in steps folder #51

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 4 additions & 3 deletions steps/ometiff_second_stitching.cwl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,10 @@ steps:
cytokit_config:
source: cytokit_config
num_concurrent_tasks:
type: int
inputBinding:
prefix: "--num_concurrent_tasks"
# type: int
# inputBinding:
# prefix: "--num_concurrent_tasks"
source: num_concurrent_tasks
out:
- bg_sub_tiles
- bg_sub_config
Expand Down
2 changes: 1 addition & 1 deletion steps/run_cytokit.cwl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ baseCommand: ["sh", "run_cytokit.sh"]
requirements:
DockerRequirement:
dockerPull: hubmap/cytokit:latest
DockerGpuRequirement: {}
#DockerGpuRequirement: {}

InitialWorkDirRequirement:
listing:
Expand Down