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Update anndata in scrna-analysis and squidpy images

Status: Open.

#52 In hubmapconsortium/salmon-rnaseq;

· pennycuda opened on Apr 10, 2026

Write spatial assays as SpatialData

Status: Open.

#47 In hubmapconsortium/salmon-rnaseq;

· mruffalo opened on Feb 2, 2026

Add SpatialData as output for visium

Status: Open.

#41 In hubmapconsortium/salmon-rnaseq;

· SFD5311 opened on Mar 13, 2025

Docker build intermittent failure

Status: Open.

#23 In hubmapconsortium/salmon-rnaseq;

· SFD5311 opened on Sep 5, 2023

Questions about python file for scanpy related to scrna-seq preprocessing

Status: Open.

#20 In hubmapconsortium/salmon-rnaseq;

· HelloWorldLTY opened on Jan 16, 2023

Allow per-dataset filtering thresholds

Status: Open.

#18 In hubmapconsortium/salmon-rnaseq;

· mruffalo opened on Sep 15, 2022

Add 10X Visium support

Status: Open.

#17 In hubmapconsortium/salmon-rnaseq;

· mruffalo opened on Apr 7, 2022

ValueError: Found array with 0 feature(s) (shape=(2, 0)) while a minimum of 1 is required.

Status: Open.

#13 In hubmapconsortium/salmon-rnaseq;

· pcantalupo opened on Sep 28, 2021