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Merged
yuanzhou merged 2 commits into from
Apr 2, 2026
Merged

Derek furst/optimize enqueue #1019

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023342f
WIP: changed how enqueing is handled all at the same time in redis
DerekFurstPitt Mar 26, 2026
b16a460
readded batch transfer call to hubmap_translator enqueue reindex
DerekFurstPitt Mar 27, 2026
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19 changes: 13 additions & 6 deletions src/hubmap_translator.py
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Original file line number Diff line number Diff line change
Expand Up @@ -807,15 +807,22 @@ def enqueue_reindex(self, entity_id, reindex_queue, priority):
associated_metadata = {}
except Exception as e:
logger.error(f"Unable to retrieve uuid and hubmap_id from entity-api. Proceed with enqueuing but this info will be missing from logging and status. {e}")
jobs = []
for related_entity_id in target_ids:
reindex_queue.enqueue(
job_metadata = associated_metadata.get(related_entity_id),
task_func=reindex_entity_queued_wrapper,
entity_id=related_entity_id,
args=[related_entity_id, self.token],
meta = associated_metadata.get(related_entity_id) or {}
jobs.append({
"entity_id": related_entity_id,
"args": [related_entity_id, self.token],
"kwargs": {},
"metadata": meta,
})
if jobs:
reindex_queue.bulk_enqueue(
task_func = reindex_entity_queued_wrapper,
jobs=jobs,
priority=subsequent_priority
)
logger.info(f"Finished executing translate() on {entity['entity_type']} of uuid: {entity_id}")
logger.info(f"Bulk-enqueued {len(jobs)} related entities for {entity_id}")
return reference_id
except ValueError as e:
raise ValueError(e)
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