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12 changes: 6 additions & 6 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -253,10 +253,10 @@ jobs:
- name: Process coverage
uses: julia-actions/julia-processcoverage@v1

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v6
- name: Upload coverage artifact (local, Codecov removed)
if: always()
uses: actions/upload-artifact@v4
with:
file: lcov.info
token: ${{ secrets.CODECOV_TOKEN }}
slug: JoshuaJewell/MetaManifold-WebUI
fail_ci_if_error: false
name: julia-coverage-lcov
path: lcov.info
if-no-files-found: warn
1 change: 0 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@ SPDX-License-Identifier: AGPL-3.0-only
[![Julia ≥ 1.0](https://img.shields.io/badge/Julia-%E2%89%A51.0-9558B2?logo=julia)](https://julialang.org)
[![R ≥ 4.0](https://img.shields.io/badge/R-%E2%89%A54.0-276DC3?logo=r)](https://www.r-project.org)
[![CI](https://github.com/JoshuaJewell/MetaManifold-WebUI/actions/workflows/ci.yml/badge.svg)](https://github.com/JoshuaJewell/MetaManifold-WebUI/actions/workflows/ci.yml)
[![codecov](https://codecov.io/gh/JoshuaJewell/MetaManifold-WebUI/graph/badge.svg?token=20F1VLF590)](https://codecov.io/gh/JoshuaJewell/MetaManifold-WebUI)

MetaManifold wraps standard amplicon sequencing workflows into a single configurable Julia orchestrator: from raw paired-end Next Generation Sequencing reads through denoising, taxonomy assignment, taxonomic filtering, and functional annotation, with interactive configuration and analysis in the browser.

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25 changes: 0 additions & 25 deletions codecov.yml

This file was deleted.

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