Implement and document AnalysisConfig, add milestone tracking, remove web bundles, and change script permissions

[coderabbitai]

The eight commits go substantially beyond the requested PR #22 docstrings:

• Add the canonical immutable AnalysisConfig implementation with compatibility aliases, stronger validation, risk banners, provenance, and DOI bundles.
• Update JSON/Nickel schemas, the DEED template, frontend types and helpers, API documentation, and Julia unit tests.
• Add Milestone 3 documentation, six deferred issue drafts, project-board automation, and tracking exceptions in .gitignore.
• Remove committed web/dist artifacts and executable permissions from the commit hook, four utility scripts, and start.sh.

Validation was not run for this metadata task. The committed milestone report records 551 frontend tests passing, 11 failing, 5 todo, and 2 errors; Julia project tests timed out during precompilation, while isolated smoke checks reportedly passed.

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[coderabbitai]

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Configuration used: Organization UI

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Run ID: 60fc23e6-f04f-4700-a5d1-2550d079b539

📥 Commits

Reviewing files that changed from the base of the PR and between defe967 and d4a1bbe.

📒 Files selected for processing (2)

• frontend/src/types/analysis_config.ts
• src/analysis/AnalysisConfig.jl

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[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

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