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fix(just): drop duplicate guix-shell recipe so the Justfile parses - #358
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The Nix eradication (593427b) turned the old nix-shell fallback into a second guix-shell recipe that tests for a nonexistent 'flake.guix'. just rejects a redefined recipe, so no recipe in this Justfile could run. Keep the real recipe (guix shell -D -f build/guix.scm). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_019j8She9eTFx54r6aL6sCHP Signed-off-by: Jonathan D.A. Jewell <6759885+hyperpolymath@users.noreply.github.com>
hyperpolymath
enabled auto-merge (squash)
October 7, 2026 11:37
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🔍 Hypatia Security ScanFindings: 113 issues detected
View findings[
{
"reason": "Job `sonarqube` in build.yml has no `timeout-minutes:` declaration. Default is 6 hours — a stuck codeload fetch or runner hang can burn budget. Add `timeout-minutes: 10` (or proportional).",
"type": "missing_timeout_minutes",
"file": ".github/workflows/build.yml",
"action": "flag",
"rule_module": "workflow_audit",
"severity": "medium",
"recipe_id": "recipe-add-workflow-timeout-minutes",
"job": "sonarqube"
},
{
"reason": "Job `triage` in label-triage.yml has no `timeout-minutes:` declaration. Default is 6 hours — a stuck codeload fetch or runner hang can burn budget. Add `timeout-minutes: 10` (or proportional).",
"type": "missing_timeout_minutes",
"file": ".github/workflows/label-triage.yml",
"action": "flag",
"rule_module": "workflow_audit",
"severity": "medium",
"recipe_id": "recipe-add-workflow-timeout-minutes",
"job": "triage"
},
{
"reason": "Job `sync` in labels.yml has no `timeout-minutes:` declaration. Default is 6 hours — a stuck codeload fetch or runner hang can burn budget. Add `timeout-minutes: 10` (or proportional).",
"type": "missing_timeout_minutes",
"file": ".github/workflows/labels.yml",
"action": "flag",
"rule_module": "workflow_audit",
"severity": "medium",
"recipe_id": "recipe-add-workflow-timeout-minutes",
"job": "sync"
},
{
"reason": "Job `deploy` in pages-deploy.yml has no `timeout-minutes:` declaration. Default is 6 hours — a stuck codeload fetch or runner hang can burn budget. Add `timeout-minutes: 10` (or proportional).",
"type": "missing_timeout_minutes",
"file": ".github/workflows/pages-deploy.yml",
"action": "flag",
"rule_module": "workflow_audit",
"severity": "medium",
"recipe_id": "recipe-add-workflow-timeout-minutes",
"job": "deploy"
},
{
"reason": "Step uses `peter-evans/repository-dispatch` with `token: ${{ secrets.FARM_DISPATCH_TOKEN }}` but has no `if: secrets.FARM_DISPATCH_TOKEN != ''` gate. On repos where the secret hasn't been propagated the action fails on every push, red-maining the repo. Add the step-level gate (or env+if pattern) so the missing-secret path is a clean skip instead of a red.",
"type": "secret_action_without_presence_gate",
"file": ".github/workflows/instant-sync.yml",
"action": "peter-evans/repository-dispatch",
"rule_module": "workflow_audit",
"severity": "high",
"fix_recipe": "add_secret_presence_gate"
},
{
"reason": "codeql.yml does not list `language: actions` in its matrix, but the repo has workflow files. CodeQL's `actions` language scans workflow YAML for injection and other CI/CD-specific weaknesses — every repo with workflows benefits. Add an entry to `matrix.include` with `language: actions` + `build-mode: none`.",
"type": "codeql_missing_actions_language",
"file": ".github/workflows/codeql.yml",
"action": "flag",
"rule_module": "workflow_audit",
"severity": "medium",
"fix_recipe": "add_codeql_actions_language"
},
{
"line": 39,
"reason": "job in .github/workflows/labels.yml references `secrets.*` but does not install `step-security/harden-runner` — review outbound-egress monitoring",
"type": "RE001",
"file": ".github/workflows/labels.yml",
"action": "report",
"rule_module": "research_extensions",
"severity": "medium"
},
{
"line": 46,
"reason": "job in .github/workflows/push-email-notify.yml references `secrets.*` but does not install `step-security/harden-runner` — review outbound-egress monitoring",
"type": "RE001",
"file": ".github/workflows/push-email-notify.yml",
"action": "report",
"rule_module": "research_extensions",
"severity": "medium"
},
{
"line": 32,
"reason": "job in .github/workflows/build.yml references `secrets.*` but does not install `step-security/harden-runner` — review outbound-egress monitoring",
"type": "RE001",
"file": ".github/workflows/build.yml",
"action": "report",
"rule_module": "research_extensions",
"severity": "medium"
},
{
"line": 44,
"reason": "job in .github/workflows/container-publish.yml references `secrets.*` but does not install `step-security/harden-runner` — review outbound-egress monitoring",
"type": "RE001",
"file": ".github/workflows/container-publish.yml",
"action": "report",
"rule_module": "research_extensions",
"severity": "medium"
}
]Powered by Hypatia Neurosymbolic CI/CD Intelligence |
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Summary
The Justfile on
maindoes not parse, so nojustrecipe in this repo can run:The Nix eradication (593427b, 2026-08-23) turned the old nix-shell fallback into a second
guix-shellrecipe that tests for a nonexistentflake.guix. This PR deletes that dead duplicate and keeps the real recipe,guix shell -D -f build/guix.scm.Changes
Justfile: removes the 4-line "fallback"guix-shellrecipe (comment, header, body, blank line).Type of change
Bug fix (build tooling).
📌 New pins
Head SHA: fcab795. No action, lockfile or container pins are added or changed.
RSR Quality Checklist
Required
just --listnow parses and lists 107 recipes. Onmainit fails with the error above.guix develop/flake.guixreference is a step toward this.unsafeblocks. Not applicable.As Applicable
.machine_readable/*. Not applicable.Testing
just --justfile <main's Justfile> --list→error: recipe guix-shell … is redefined on line 1063.just --list→ rc 0,just --summary→ 107 recipes.just. The onlyjusthit under.github/workflowsis prose in a comment. So CI cannot have caught this, and it does not exercise the fix either.Pre-existing red checks (deferred, not introduced here)
SonarQube: red on main, tracked in Three pre-existing red non-required checks on main: Allowlist Preflight (empty GH_TOKEN), Workflow security linter (duplicatewithin abi-drift.yml), SonarQube (403) #338.governance / UUID v7 conformance: red on main, tracked in governance / UUID v7 conformance is red on main: v5 UUID literal in .machine_readable/CLADE.a2ml #347.🤖 Generated with Claude Code
https://claude.ai/code/session_019j8She9eTFx54r6aL6sCHP