fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

[hyperpolymath]

Summary

Estate-wide incident: github/codeql-action v4.38.1 fails GitHub workflow startup on every repo that took it — CodeQL/Hypatia runs die with startup_failure, zero jobs dispatched, no error text in any API surface. The evidence chain (full detail: nexia-list#100):

repo	ref	status
nexia-list	@v4.38.1 tag (via dependabot #94)	🔴 startup_failure → fixed by rollback #100 (merged)
hypatia	@1c5b675 (4.38.1 SHA)	🔴
vexometer	@v4.38.1	🔴 (since Sep-21)
rsr-template-repo	@1c5b675	🔴
affinescript / boj-server / deed-ecosystem	≤ v4.38.0	✅ green

The v4.38.1 tag exists (peels to 1c5b675) and byte-identical workflow content runs under a fresh path — so the failure is the version value itself at GitHub's start-validation layer, not content, permissions (probes with security-events start fine), or the default-setup conflict.

Changes here

• codeql-reusable.yml, hypatia-scan-reusable.yml: codeql-action/* re-pinned 1c5b675 (v4.38.1) → b96794f0 (v4.38.0 commit; wrong # v3 comments corrected to # v4.38.0).
• actions.lock: re-keyed to the v4.38.0 SHA entries (dependabot bumped the reusable pins without regenerating the lock).
• dependabot.yml: full hold on github/codeql-action — scoped versions: ignores do NOT hold for this bot path (nexia-list#101 re-raised the bump in SHA form within an hour, copying the inline warning comment verbatim while swapping the SHA).

Follow-ups

Consumer rollbacks shipped in the same batch: nexia-list (merged ✅), hypatia, vexometer, rsr-template-repo, metadatastician/burble (each with the same dependabot hold). Reconsider the hold when upstream clears v4.38.1 or a newer release verifies green on one canary repo.

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Configuration used: Organization UI

Review profile: ASSERTIVE

Plan: Advanced

Run ID: 337fb3bf-7444-49e3-9227-6ea680453885

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Review profile: ASSERTIVE

Plan: Advanced

Run ID: e505d776-5ffe-457c-87b6-460158a29790

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• .github/dependabot.yml
• .github/workflows/codeql.yml

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⏰ Context from checks skipped due to timeout. (20)

• GitHub Check: governance / Code quality + docs
• GitHub Check: governance / Well-Known (RFC 9116 + RSR)
• GitHub Check: governance / Guix primary / Nix fallback policy
• GitHub Check: governance / Workflow security linter
• GitHub Check: governance / Trusted-base reduction policy
• GitHub Check: governance / Licence consistency
• GitHub Check: governance / Check Workflow Staleness
• GitHub Check: governance / Security policy checks
• GitHub Check: governance / Language / package anti-pattern policy
• GitHub Check: scan / gitleaks
• GitHub Check: scan / shell-secrets
• GitHub Check: scan / rust-secrets
• GitHub Check: hypatia / Hypatia Neurosymbolic Analysis
• GitHub Check: rust-ci / Detect Cargo.toml
• GitHub Check: Empty-linter (invisible characters)
• GitHub Check: Validate K9 contracts
• GitHub Check: Groove manifest check
• GitHub Check: Validate DEED manifests
• GitHub Check: analyze (actions, none)
• GitHub Check: build

⚠️ CI failures not shown inline (12)

GitHub Actions: Rust CI / 2_rust-ci _ Cargo check + clippy + fmt.txt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run : parse toolchain version
 �[36;1m: parse toolchain version�[0m
 �[36;1mif [[ -z $toolchain ]]; then�[0m
 �[36;1m  # GitHub does not enforce `required: true` inputs itself. https://github.com/actions/runner/issues/1070�[0m
 �[36;1m  echo "'toolchain' is a required input" >&2�[0m
 �[36;1m  exit 1�[0m
 �[36;1melif [[ $toolchain =~ ^stable' '[0-9]+' '(year|month|week|day)s?' 'ago$ ]]; then�[0m
 �[36;1m  if [[ Linux == macOS ]]; then�[0m
 �[36;1m    echo "toolchain=1.$((($(date -v-$(sed 's/stable \([0-9]*\) \(.\).*/\1\2/' <<< $toolchain) +%s)/60/60/24-16569)/7/6))" >> $GITHUB_OUTPUT�[0m
 �[36;1m  else�[0m
 �[36;1m    echo "toolchain=1.$((($(date --date "${toolchain#stable }" +%s)/60/60/24-16569)/7/6))" >> $GITHUB_OUTPUT�[0m
 �[36;1m  fi�[0m
 �[36;1melif [[ $toolchain =~ ^stable' 'minus' '[0-9]+' 'releases?$ ]]; then�[0m
 �[36;1m  echo "toolchain=1.$((($(date +%s)/60/60/24-16569)/7/6-${toolchain//[^0-9]/}))" >> $GITHUB_OUTPUT�[0m
 �[36;1melif [[ $toolchain =~ ^1\.[0-9]+$ ]]; then�[0m
 �[36;1m  echo "toolchain=1.$((i=${toolchain#1.}, c=($(date +%s)/60/60/24-16569)/7/6, i+9*i*(10*i<=c)+90*i*(100*i<=c)))" >> $GITHUB_OUTPUT�[0m
 �[36;1melse�[0m
 �[36;1m  echo "toolchain=$toolchain" >> $GITHUB_OUTPUT�[0m
 �[36;1mfi�[0m
 shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
 env:
   toolchain:
 ##[endgroup]
 'toolchain' is a required input
 ##[error]Process completed with exit code 1.

---

GitHub Actions: Rust CI / rust-ci _ Cargo check + clippy + fmt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run : parse toolchain version
 �[36;1m: parse toolchain version�[0m
 �[36;1mif [[ -z $toolchain ]]; then�[0m
 �[36;1m  # GitHub does not enforce `required: true` inputs itself. https://github.com/actions/runner/issues/1070�[0m
 �[36;1m  echo "'toolchain' is a required input" >&2�[0m
 �[36;1m  exit 1�[0m
 �[36;1melif [[ $toolchain =~ ^stable' '[0-9]+' '(year|month|week|day)s?' 'ago$ ]]; then�[0m
 �[36;1m  if [[ Linux == macOS ]]; then�[0m
 �[36;1m    echo "toolchain=1.$((($(date -v-$(sed 's/stable \([0-9]*\) \(.\).*/\1\2/' <<< $toolchain) +%s)/60/60/24-16569)/7/6))" >> $GITHUB_OUTPUT�[0m
 �[36;1m  else�[0m
 �[36;1m    echo "toolchain=1.$((($(date --date "${toolchain#stable }" +%s)/60/60/24-16569)/7/6))" >> $GITHUB_OUTPUT�[0m
 �[36;1m  fi�[0m
 �[36;1melif [[ $toolchain =~ ^stable' 'minus' '[0-9]+' 'releases?$ ]]; then�[0m
 �[36;1m  echo "toolchain=1.$((($(date +%s)/60/60/24-16569)/7/6-${toolchain//[^0-9]/}))" >> $GITHUB_OUTPUT�[0m
 �[36;1melif [[ $toolchain =~ ^1\.[0-9]+$ ]]; then�[0m
 �[36;1m  echo "toolchain=1.$((i=${toolchain#1.}, c=($(date +%s)/60/60/24-16569)/7/6, i+9*i*(10*i<=c)+90*i*(100*i<=c)))" >> $GITHUB_OUTPUT�[0m
 �[36;1melse�[0m
 �[36;1m  echo "toolchain=$toolchain" >> $GITHUB_OUTPUT�[0m
 �[36;1mfi�[0m
 shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
 env:
   toolchain:
 ##[endgroup]
 'toolchain' is a required input
 ##[error]Process completed with exit code 1.

---

GitHub Actions: Governance / 1_governance _ Code quality + docs.txt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run editorconfig-checker/action-editorconfig-checker@840e866d93b8e032123c23bac69dece044d4d84c
 with:
   github-***REDACTED_SECRET_ASSIGNMENT***
   version: latest
 ##[endgroup]
 Find 'latest' release
 ##[error]Error: The binary 'ec-linux-amd64*' not found

---

GitHub Actions: Governance / governance _ Code quality + docs: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run editorconfig-checker/action-editorconfig-checker@840e866d93b8e032123c23bac69dece044d4d84c
 with:
   github-***REDACTED_SECRET_ASSIGNMENT***
   version: latest
 ##[endgroup]
 Find 'latest' release
 ##[error]Error: The binary 'ec-linux-amd64*' not found

---

GitHub Actions: Governance / governance _ Code quality + docs: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run # Split gate (standards#505): README + LICENSE block immediately —
 �[36;1m# Split gate (standards#505): README + LICENSE block immediately —�[0m
 �[36;1m# measured 0/412 callers missing either, so arming them reds nobody.�[0m
 �[36;1m# CONTRIBUTING (54/412 missing) warns until the cutoff baked into the�[0m
 �[36;1m# script, then blocks. See scripts/check-docs-presence.sh.�[0m
 �[36;1mcp .standards-checkout/scripts/check-docs-presence.sh "$RUNNER_TEMP/"�[0m
 �[36;1mrm -rf .standards-checkout�[0m
 �[36;1mbash "$RUNNER_TEMP/check-docs-presence.sh" .�[0m
 shell: /usr/bin/bash -e {0}
 ##[endgroup]
 ##[error]Missing required documentation: CONTRIBUTING

---

GitHub Actions: Governance / 2_governance _ Well-Known (RFC 9116 + RSR).txt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run SECTXT=""
 �[36;1mSECTXT=""�[0m
 �[36;1m[ -f ".well-known/security.txt" ] && SECTXT=".well-known/security.txt"�[0m
 �[36;1m[ -f "security.txt" ] && SECTXT="security.txt"�[0m
 �[36;1mif [ -z "$SECTXT" ]; then�[0m
 �[36;1m  echo "::warning::No security.txt found."�[0m
 �[36;1m  exit 0�[0m
 �[36;1mfi�[0m
 �[36;1mgrep -q "^Contact:" "$SECTXT" || { echo "::error::Missing Contact field"; exit 1; }�[0m

---

GitHub Actions: Governance / governance _ Well-Known (RFC 9116 + RSR): fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run SECTXT=""
 �[36;1mSECTXT=""�[0m
 �[36;1m[ -f ".well-known/security.txt" ] && SECTXT=".well-known/security.txt"�[0m
 �[36;1m[ -f "security.txt" ] && SECTXT="security.txt"�[0m
 �[36;1mif [ -z "$SECTXT" ]; then�[0m
 �[36;1m  echo "::warning::No security.txt found."�[0m
 �[36;1m  exit 0�[0m
 �[36;1mfi�[0m
 �[36;1mgrep -q "^Contact:" "$SECTXT" || { echo "::error::Missing Contact field"; exit 1; }�[0m

---

GitHub Actions: Governance / governance _ Well-Known (RFC 9116 + RSR): fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run MIXED=$(grep -rE 'src="http://|href="http://' --include="*.html" --include="*.htm" . 2>/dev/null | grep -vE 'localhost|127\.0\.0\.1|example\.com|lol/|node_modules/|third-party/|vendor/' | head -5 || true)
 �[36;1mMIXED=$(grep -rE 'src="http://|href="http://' --include="*.html" --include="*.htm" . 2>/dev/null | grep -vE 'localhost|127\.0\.0\.1|example\.com|lol/|node_modules/|third-party/|vendor/' | head -5 || true)�[0m
 �[36;1mif [ -n "$MIXED" ]; then�[0m
 �[36;1m  echo "::error::Mixed content (HTTP in HTML)"�[0m

---

GitHub Actions: Governance / 3_governance _ Guix primary _ Nix fallback policy.txt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run # Move the checker OUT of the scanned tree and delete the standards
 �[36;1m# Move the checker OUT of the scanned tree and delete the standards�[0m
 �[36;1m# checkout before scanning: the gate walks the whole caller tree, so�[0m
 �[36;1m# a packaging file shipped inside .standards-checkout/ would satisfy�[0m
 �[36;1m# the policy on the caller's behalf (same trap as the baseline job).�[0m
 �[36;1mcp .standards-checkout/scripts/check-package-policy.sh "$RUNNER_TEMP/"�[0m
 �[36;1mrm -rf .standards-checkout�[0m
 �[36;1mbash "$RUNNER_TEMP/check-package-policy.sh" .�[0m
 shell: /usr/bin/bash -e {0}
 ##[endgroup]
 ##[error]Package policy violation: no packaging found.

---

GitHub Actions: Governance / governance _ Guix primary _ Nix fallback policy: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run # Move the checker OUT of the scanned tree and delete the standards
 �[36;1m# Move the checker OUT of the scanned tree and delete the standards�[0m
 �[36;1m# checkout before scanning: the gate walks the whole caller tree, so�[0m
 �[36;1m# a packaging file shipped inside .standards-checkout/ would satisfy�[0m
 �[36;1m# the policy on the caller's behalf (same trap as the baseline job).�[0m
 �[36;1mcp .standards-checkout/scripts/check-package-policy.sh "$RUNNER_TEMP/"�[0m
 �[36;1mrm -rf .standards-checkout�[0m
 �[36;1mbash "$RUNNER_TEMP/check-package-policy.sh" .�[0m
 shell: /usr/bin/bash -e {0}
 ##[endgroup]
 ##[error]Package policy violation: no packaging found.

---

GitHub Actions: Governance / 8_governance _ Security policy checks.txt: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run set -uo pipefail
 �[36;1mset -uo pipefail�[0m
 �[36;1mDIR=.github/canonical-references�[0m
 �[36;1mif [ ! -d "$DIR" ]; then�[0m
 �[36;1m  echo "ℹ️  [R5] no $DIR/ — skipped (repo has not opted in)"�[0m
 �[36;1m  exit 0�[0m
 �[36;1mfi�[0m
 �[36;1mif ! command -v python3 >/dev/null 2>&1; then�[0m
 �[36;1m  echo "❌ [R5] python3 missing on runner — required for YAML rule parsing"�[0m
 �[36;1m  exit 2�[0m
 �[36;1mfi�[0m
 �[36;1mpython3 - <<'PY'�[0m
 �[36;1mimport os, sys, glob, subprocess�[0m
 �[36;1mtry:�[0m
 �[36;1m    import yaml�[0m
 �[36;1mexcept ImportError:�[0m
 �[36;1m    sys.exit("❌ [R5] PyYAML not installed on runner; install python3-yaml")�[0m
 �[36;1m�[0m
 �[36;1mdir_ = ".github/canonical-references"�[0m
 �[36;1mfiles = sorted(glob.glob(f"{dir_}/*.yml") + glob.glob(f"{dir_}/*.yaml"))�[0m
 �[36;1mif not files:�[0m
 �[36;1m    print(f"ℹ️  [R5] {dir_}/ has no .yml/.yaml rules — skipped")�[0m
 �[36;1m    sys.exit(0)�[0m
 �[36;1m�[0m
 �[36;1mtotal = 0�[0m
 �[36;1mfor rf in files:�[0m
 �[36;1m    with open(rf, encoding="utf-8") as fh:�[0m
 �[36;1m        cfg = yaml.safe_load(fh)�[0m
 �[36;1m    if not isinstance(cfg, dict):�[0m
 �[36;1m        print(f"❌ [R5] {rf}: top-level must be a mapping"); total += 1; continue�[0m
 �[36;1m    rid  = cfg.get("id", os.path.basename(rf))�[0m
 �[36;1m    desc = cfg.get("description", "")�[0m
 �[36;1m    pats = cfg.get("patterns") or []�[0m
 �[36;1m    canon = cfg.get("canonical_pointer", "")�[0m
 �[36;1m    scope = (cfg.get("scope") or {})�[0m
 �[36;1m    includes = scope.get("include") or []�[0m
 �[36;1m    if not pats or not includes:�[0m
 �[36;1m        print(f"❌ [R5:{rid}] missing patterns or scope.include in {rf}")�[0m
 �[36;1m        total += 1; continue�[0m
 �[36;1m    # exclude self-references�[0m
 �[36;1m    skip = set(["CHANGELOG.md", "CHANGELOG.adoc", rf])�[0m
 �[36;1m    if canon: skip.add(canon)�[0m
 �[36;1m    rule_hits = 0�[0m
 �[36;1m    for f_ in includes:�[0m
 �[36;1m        if f_ in skip or not os...

---

GitHub Actions: Governance / governance _ Security policy checks: fix(ci): codeql-action v4.38.1 -> v4.38.0 SHA pin + dependabot hold (estate-wide startup_failure)

Conclusion: failure

View job details

##[group]Run set -uo pipefail
 �[36;1mset -uo pipefail�[0m
 �[36;1mDIR=.github/canonical-references�[0m
 �[36;1mif [ ! -d "$DIR" ]; then�[0m
 �[36;1m  echo "ℹ️  [R5] no $DIR/ — skipped (repo has not opted in)"�[0m
 �[36;1m  exit 0�[0m
 �[36;1mfi�[0m
 �[36;1mif ! command -v python3 >/dev/null 2>&1; then�[0m
 �[36;1m  echo "❌ [R5] python3 missing on runner — required for YAML rule parsing"�[0m
 �[36;1m  exit 2�[0m
 �[36;1mfi�[0m
 �[36;1mpython3 - <<'PY'�[0m
 �[36;1mimport os, sys, glob, subprocess�[0m
 �[36;1mtry:�[0m
 �[36;1m    import yaml�[0m
 �[36;1mexcept ImportError:�[0m
 �[36;1m    sys.exit("❌ [R5] PyYAML not installed on runner; install python3-yaml")�[0m
 �[36;1m�[0m
 �[36;1mdir_ = ".github/canonical-references"�[0m
 �[36;1mfiles = sorted(glob.glob(f"{dir_}/*.yml") + glob.glob(f"{dir_}/*.yaml"))�[0m
 �[36;1mif not files:�[0m
 �[36;1m    print(f"ℹ️  [R5] {dir_}/ has no .yml/.yaml rules — skipped")�[0m
 �[36;1m    sys.exit(0)�[0m
 �[36;1m�[0m
 �[36;1mtotal = 0�[0m
 �[36;1mfor rf in files:�[0m
 �[36;1m    with open(rf, encoding="utf-8") as fh:�[0m
 �[36;1m        cfg = yaml.safe_load(fh)�[0m
 �[36;1m    if not isinstance(cfg, dict):�[0m
 �[36;1m        print(f"❌ [R5] {rf}: top-level must be a mapping"); total += 1; continue�[0m
 �[36;1m    rid  = cfg.get("id", os.path.basename(rf))�[0m
 �[36;1m    desc = cfg.get("description", "")�[0m
 �[36;1m    pats = cfg.get("patterns") or []�[0m
 �[36;1m    canon = cfg.get("canonical_pointer", "")�[0m
 �[36;1m    scope = (cfg.get("scope") or {})�[0m
 �[36;1m    includes = scope.get("include") or []�[0m
 �[36;1m    if not pats or not includes:�[0m
 �[36;1m        print(f"❌ [R5:{rid}] missing patterns or scope.include in {rf}")�[0m
 �[36;1m        total += 1; continue�[0m
 �[36;1m    # exclude self-references�[0m
 �[36;1m    skip = set(["CHANGELOG.md", "CHANGELOG.adoc", rf])�[0m
 �[36;1m    if canon: skip.add(canon)�[0m
 �[36;1m    rule_hits = 0�[0m
 �[36;1m    for f_ in includes:�[0m
 �[36;1m        if f_ in skip or not os...

🔇 Additional comments (2)

.github/workflows/codeql.yml (1)

37-37: LGTM!

Also applies to: 42-42

.github/dependabot.yml (1)

18-25: LGTM!

---

📝 Summary

Summary by CodeRabbit

• Bug Fixes

  • Improved the reliability of automated security analysis by updating its underlying scanning components.
  • Prevented an incompatible update from being adopted automatically, avoiding workflow validation failures.

• Chores

  • Kept security-analysis tooling on a verified version until a newer compatible release is available.

Walkthrough

The CodeQL workflow now uses the v4.38.0 action commit. Dependabot ignores further CodeQL action updates and documents the v4.38.1 workflow-startup validation failure.

Changes

CodeQL action update

Layer / File(s)	Summary
Pin and hold CodeQL action .github/workflows/codeql.yml, .github/dependabot.yml	The workflow updates the init and analyze steps to the v4.38.0 commit. Dependabot ignores github/codeql-action updates and documents the hold. Existing action inputs remain unchanged.

Priority: ⬆️ High

Estimated code review effort: 1 (Trivial) | ~5 minutes

Change: Bug fix · Severity of issue fixed: Medium

Merge Risk: ⚪ Minimal · up to f6c70

The workflow pins CodeQL to v4.38.0 and holds later updates to avoid the reported startup failure; it is ready to merge with normal checks.

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Title check	✅ Passed	The title clearly describes the CodeQL rollback and the Dependabot hold. It is specific to the main changes, although it is slightly long.
Description check	✅ Passed	The description directly explains the v4.38.1 startup failure, the rollback to v4.38.0, and the Dependabot hold. It is relevant to the changeset.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check. Docstring coverage is scoped to functions touched by this diff. Analyzed 0 functions across 0…
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

✨ Finishing Touches 💡 1

🛠️ Fix failing CI checks 💡

❌ Error running CI fixer.

• Commit to this branch
• Create a new PR

---

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_{A rabbit pins the CodeQL trail
At v4.38.0, neat and pale
Dependabot pauses by the gate
While validation checks its state
The workflow hops, precise and bright
And keeps its inputs just right}

_{Comment @coderabbitai help to get the list of available commands.}

[coderabbitai]

✅ Coding Agent task started: View task and status

The task will inspect the CI failures, validate its fix, and commit the fix to this branch automatically.

Note: Fixing CI failures is a beta feature and may encounter errors. Expect some limitations and changes as we gather feedback and continue to improve it.

[coderabbitai]

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