A companion github repository for http://impact-cyto.inserm.fr and workshops supported by Association Française de Cytométrie
All repositories are at https://github.com/i-cyto
2024-11-19 analycyte workshop
- analycyte workshop @ Toulouse
2024-05-07 analycyte
- analycyte presentation @ CYTO2024
2023-07-07 JT AFC Heatmap & Stats
- Heatmap and Statistics
2023-06-29 Webinar AFC Heatmap
- Heatmap of abundance
2023-06-12 Inserm workshop Passeport Cytométrie
- Atelier Inserm 2023
2023-05-10 Webinar AFC Heatmap
- Heatmap of MFI
2022-05-24 Analysis cytofkitlab-cytofast
- updated analysis workflow using cytofkitlab 2022_cytofkitlab.zip
2020-04-27 Quantile normalisation
- analysis and explanation of the quantile normalisation
- CytofBatchAdjust is available for Windows
2020-04-17 Analysis cytofkitlab-cytofast
- updated analysis workflow using cytofkitlab JT_AFC_2020_cytofkitlab
- first part consists in cytofkit computation and exploration; it is based on Graphical User Interfaces (GUI)
- second part is dedicated to cytofast analysis; it needs hand configuration, but a lot of comments are available
- third part describes some useful commands to repeat analyses in order tune parameters
2020-02-07 Analysis cytofkit-cytofast
- announcement Atelier AFC 2020
2019-09-17 Atelier AFC 2019
- deprecated, see Atelier AFC 2020
2019-09-13 cytofkitlab
- few updates to cytofkit, see GUI screenshot
- tested on a fresh install of R 3.6.1 (and 3.6.2) + Rtools 3.5 on Windows 10 or 7 64bits using the following commands to install packages
2019-09-13 cytofast
- import FCS from cytofkit, now in cytofkitlab
- nice heatmap of combined markers and percentages
2019-06-06 cytofkit
- Now forked as cytofkitlab
- Clustering parameters are clearly organized to each method in the GUI
- Compensation is taken into account
- Range for cluster is set to max + 1