TOFUpaper

Scripts used in the TOFU-MAaPO paper

Repository Overview

Directories

• assembly_benchmarks/: Scripts for benchmarking the MAG assembly of TOFU-MAaPO against ATLAS, metaFun, and nf-core/mag on SRP102150 samples.
• curMetagenome_processing/: Batch scripts and analysis code for large-scale curated metagenome sylph profiling.
• metaphlan_humann_results_SRP102150/: MetaPhlAn/HUMAnN abundance tables, metadata, and analysis scripts for the SRP102150 dataset.

Top-level files

• curatedmetagenomics_sample_list_sex_age.csv: Sample metadata table used for large-scale curated metagenome sylph profiling.