Temporary remove tm_gtsummary module

[averissimo]

Pull Request

• Fixes Temporary remove tm_gtsummary from main #1000
• Part of [CRAN Release]: 0.7.0 #981

Changes description

• Removes all files introduced by gtsummary, but not some of the fixes introduced
• Replaces gtsummary module with scatterplot in test-utils.R

[github-actions]

Code Coverage Summary

Filename                      Stmts    Miss  Cover    Missing
--------------------------  -------  ------  -------  ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R/geom_mosaic.R                  73       0  100.00%
R/tm_a_pca.R                    852       0  100.00%
R/tm_a_regression.R             750     391  47.87%   496-523, 530-533, 540-541, 545-555, 559, 563-575, 580-595, 600-622, 625-633, 637-665, 670-680, 683-709, 716-740, 743-768, 775-782, 785-811, 818-846, 849-874, 881-900, 903-929, 936-950, 953-979, 1004, 1008
R/tm_data_table.R               204       8  96.08%   110, 115-120, 330
R/tm_file_viewer.R              172      50  70.93%   141-152, 156-163, 165-167, 172-182, 184, 204, 229-235, 237-238, 240, 244-250
R/tm_front_page.R               143       0  100.00%
R/tm_g_association.R            320      72  77.50%   226-294, 319, 325, 474, 488
R/tm_g_bivariate.R              672     196  70.83%   332-471, 505, 511-514, 585, 590, 595, 616-618, 655-658, 668-682, 684-685, 712-721, 763, 829, 940, 987, 989, 991, 998-1008
R/tm_g_distribution.R          1115      60  94.62%   418-426, 432-435, 474-475, 477, 479, 488, 490, 494-497, 501-504, 507, 519-520, 575, 586, 600, 895, 1082-1086, 1155-1159, 1161-1167, 1298-1301, 1319-1321, 1407-1408
R/tm_g_response.R               345      87  74.78%   184-185, 192, 198, 259-325, 348-352, 425, 430, 447-453, 531, 537, 550
R/tm_g_scatterplot.R            709     259  63.47%   359-501, 534-537, 575, 624, 636, 650, 667, 672, 698-711, 787-798, 837, 845-882, 894-896, 906-912, 919-921, 932-940, 942-943, 945, 949, 983-996, 1040, 1060
R/tm_g_scatterplotmatrix.R      336     145  56.85%   262-360, 383, 386, 441-447, 461-464, 466, 489-492, 504, 507-519, 525-526, 532-534, 586-594
R/tm_missing_data.R            1180     167  85.85%   129, 488, 494, 507, 512, 532-538, 547-553, 620-635, 676, 680, 721, 739-746, 771, 787-790, 848-927, 931-933, 964-971, 1104, 1241, 1280, 1332-1334, 1344-1364, 1472, 1474, 1477-1478
R/tm_outliers.R                1029     186  81.92%   400, 428, 438-439, 441-442, 517-531, 533, 613, 616, 654-706, 709-747, 759, 790, 809, 812-827, 888-891, 965-993, 1117, 1220-1223, 1227, 1230-1233, 1239-1248, 1250, 1254-1263, 1266-1267, 1269
R/tm_rmarkdown.R                159       0  100.00%
R/tm_t_crosstable.R             263      56  78.71%   227-269, 292-293, 309, 318, 425, 438-447
R/tm_variable_browser.R         887      27  96.96%   395, 597, 812-826, 956, 984, 986, 1058-1059, 1067, 1165, 1246, 1278, 1310
R/utils.R                       148      21  85.81%   146, 177, 227, 288-291, 300-306, 314, 350, 353, 366-371
R/zzz.R                           2       2  0.00%    2-3
TOTAL                          9359    1727  81.55%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  -------
R/utils.R         0      +6  -4.05%
TOTAL             0      +6  -0.35%

Results for commit: ab5944d

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

    1 files     36 suites   27m 4s ⏱️
  663 tests   662 ✅ 1 💤 0 ❌
1 288 runs  1 287 ✅ 1 💤 0 ❌

Results for commit ab5944d.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
shinytest2-tm_a_pca	💔	$228.05$	$+9.05$	$0$	$0$	$0$	$0$
shinytest2-tm_a_regression	💔	$91.28$	$+3.81$	$0$	$0$	$0$	$0$
shinytest2-tm_data_table	💔	$37.45$	$+1.52$	$0$	$0$	$0$	$0$
shinytest2-tm_file_viewer	💔	$44.66$	$+1.64$	$0$	$0$	$0$	$0$
shinytest2-tm_g_distribution	💚	$122.62$	$-2.26$	$0$	$0$	$0$	$0$
shinytest2-tm_g_response	💚	$52.42$	$-1.53$	$0$	$0$	$0$	$0$
shinytest2-tm_g_scatterplot	💚	$144.41$	$-2.66$	$0$	$0$	$0$	$0$
shinytest2-tm_g_scatterplotmatrix	💚	$70.22$	$-2.37$	$0$	$0$	$0$	$0$
shinytest2-tm_outliers	💚	$180.63$	$-3.14$	$0$	$0$	$0$	$0$
shinytest2-tm_variable_browser	💚	$103.78$	$-2.10$	$0$	$0$	$0$	$0$
tm_a_pca	💚	$17.44$	$-1.75$	$0$	$0$	$0$	$0$
tm_g_bivariate	💚	$8.77$	$-1.34$	$0$	$0$	$0$	$0$
tm_gtsummary	💀	$13.73$	$-13.73$	$-29$	$0$	$0$	$0$
tm_outliers	💚	$53.39$	$-2.21$	$0$	$0$	$0$	$0$
utils	💚	$11.39$	$-3.20$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
examples	💀	$0.07$	$-0.07$	example_tm_gtsummary.Rd
shinytest2-tm_a_pca	💔	$16.04$	$+1.28$	e2e_tm_a_pca_Changing_output_encodings_for_plot_type_does_not_generate_errors.
shinytest2-tm_a_pca	💔	$34.62$	$+1.95$	e2e_tm_a_pca_Changing_output_encodings_of_plot_type_hides_and_shows_options.
shinytest2-tm_a_pca	💔	$15.60$	$+1.00$	e2e_tm_a_pca_Changing_output_encodings_of_standardization_does_not_generate_errors.
shinytest2-tm_a_pca	💔	$14.87$	$+1.18$	e2e_tm_a_pca_Color_by_columns_data_extract_must_be_from_non_selected_variable_set.
shinytest2-tm_g_bivariate	💚	$41.51$	$-1.94$	e2e_tm_g_bivariate_Setting_encoding_inputs_produces_outputs_without_validation_errors.
shinytest2-tm_g_distribution	💚	$79.65$	$-1.01$	e2e_tm_g_distribution_Module_is_initialised_with_the_specified_defaults.
shinytest2-tm_g_response	💚	$20.14$	$-1.08$	e2e_tm_g_response_encoding_inputs_produce_output_without_validation_errors.
shinytest2-tm_g_scatterplot	💚	$91.50$	$-1.41$	e2e_tm_g_scatterplot_The_encoding_inputs_are_set_without_validation_errors.
shinytest2-tm_variable_browser	💚	$16.08$	$-1.01$	e2e_tm_variable_browser_Selecting_treat_variable_as_factor_changes_the_table_headers.
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_accepts_valid_decorators
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_creates_a_teal_module_object_with_list_of_data_extract_specs
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_by_allows_multiple_selection
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_by_is_not_a_data_extract_spec_or_list
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_col_label_is_not_character
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_decorators_has_invalid_object_types
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_decorators_is_to_a_different_object
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_include_is_not_a_data_extract_spec_or_list
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_input_validation_fails_when_label_is_not_a_string
tm_gtsummary	💀	$0.00$	$-0.00$	tm_gtsummary_input_validation_pass_when_include_allows_multiple_selection
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_module_creation_accepts_crane_tbl_roche_summary_arguments
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_module_creation_creates_a_module_that_is_bookmarkable
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_module_creation_creates_a_module_with_datanames_taken_from_data_extracts
tm_gtsummary	💀	$0.02$	$-0.02$	tm_gtsummary_module_creation_creates_a_teal_module_object
tm_gtsummary	💀	$0.01$	$-0.01$	tm_gtsummary_module_creation_creates_a_teal_module_object_with_list_of_data_extract_specs
tm_gtsummary	💀	$2.66$	$-2.66$	tm_gtsummary_module_server_behavior_server_function_executes_successfully_through_module_interface
tm_gtsummary	💀	$2.32$	$-2.32$	tm_gtsummary_module_server_behavior_server_function_generates_table_with_col_label_
tm_gtsummary	💀	$3.40$	$-3.40$	tm_gtsummary_module_server_behavior_server_function_generates_table_with_include_being_NULL
tm_gtsummary	💀	$5.16$	$-5.16$	tm_gtsummary_module_server_behavior_with_decorators_one_decorator_executes_successfully
tm_gtsummary	💀	$0.05$	$-0.05$	tm_gtsummary_module_ui_behavior_returns_a_htmltools_tag_or_taglist_with_minimal_arguments
tm_outliers	💚	$3.28$	$-1.01$	tm_outliers_module_server_behavior_server_function_handles_both_split_outliers_and_order_by_outlier
tm_t_crosstable	💔	$0.65$	$+1.05$	tm_t_crosstable_module_server_behavior_server_function_generates_table_with_show_total_enabled

Results for commit 1de3364

♻️ This comment has been updated with latest results.

[llrs-roche]

Looks good, thanks for keeping the tests about decorators.