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fix existing output directory issue #45

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Merged
omgol411 merged 2 commits into from
Apr 13, 2026
Merged

fix existing output directory issue #45

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ccf4a33
fix existing output directory issue
omgol411 Apr 13, 2026
0d0789e
Merge branch 'isblab:main' into main
omgol411 Apr 13, 2026
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18 changes: 9 additions & 9 deletions src/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -90,6 +90,10 @@ def get_bead_spread(i, coords, mass, radius, grid, voxel_size, n_breaks):
return spread

def run_prism( coords, mass, radius, ps_names, args, output_dir = None ):

if output_dir is None:
output_dir = args.output

models = round(args.models*coords.shape[0])
if args.models != 1:
selected_models = np.random.choice(coords.shape[0], models, replace=False)
Expand All @@ -116,15 +120,11 @@ def run_prism( coords, mass, radius, ps_names, args, output_dir = None ):
print('Bead Spread calculation done')

# If not specified create a default output directory.
if not os.path.exists(args.output) and output_dir == None:
os.makedirs(args.output)
else:
args.output = output_dir
os.makedirs(args.output)
os.makedirs(output_dir, exist_ok=True)

# Save the bead_spread values.
if args.return_spread == 1:
with open(args.output + "/bead_spreads_cl" + str(args.classes) + ".txt", "w") as fl:
with open(output_dir + "/bead_spreads_cl" + str(args.classes) + ".txt", "w") as fl:
for bs in bead_spread:
fl.write('{:0.3f}'.format(bs))
fl.write("\n")
Expand All @@ -138,9 +138,9 @@ def run_prism( coords, mass, radius, ps_names, args, output_dir = None ):
annot_df = pd.DataFrame(np.array(annotated_patches), columns = ['Bead', 'Bead Name', 'Type', 'Class', 'Patch'])
annot_df['Patch'] = pd.to_numeric(annot_df["Patch"])
annot_df.sort_values(['Patch'], ascending=[True])
annot_df.to_csv(args.output + '/annotations_cl' + str(args.classes) + '.txt', index=None)
annot_df.to_csv(output_dir + '/annotations_cl' + str(args.classes) + '.txt', index=None)

with open(args.output + "/low_prec_cl" + str(args.classes) + ".txt", "w") as fl:
with open(output_dir + "/low_prec_cl" + str(args.classes) + ".txt", "w") as fl:
lev = 1
fl.write("Level" + "\t" + "Bead Indices" + "\t" + "Bead Names")
fl.write("\n")
Expand All @@ -154,7 +154,7 @@ def run_prism( coords, mass, radius, ps_names, args, output_dir = None ):
fl.write("\n")
lev=lev+1

with open(args.output + "/high_prec_cl" + str(args.classes) + ".txt", "w") as fl:
with open(output_dir + "/high_prec_cl" + str(args.classes) + ".txt", "w") as fl:
lev = 1
fl.write("Level" + "\t" + "Bead Indices" + "\t" + "Bead Names")
fl.write("\n")
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