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Minor adjustments of imports and readme. #1

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Minor adjustments of imports and readme. #1

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4ac38e7
Update list of dependencies
christoph26 Jul 2, 2021
28ac14c
Remove relative import error by changing "import . from xx" to "impor…
christoph26 Jul 2, 2021
843aad9
Add additional dependency to readme.
christoph26 Jul 5, 2022
ccd60a2
Fix bug during frame selection: If the motion graph is monotonous no …
christoph26 Jul 6, 2022
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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -49,4 +49,4 @@ Output of flags `g`, `t`, and `p` is saved at the data location in a new folder

# Dependencies

The program requires `numpy`, `scipy`, and `scikit-image`.
The program requires `numpy`, `scipy`, `scikit-image`, `matplotlib`, `pandas`, and `happy-tools`.
8 changes: 5 additions & 3 deletions find_optimal_frames.py
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Expand Up @@ -11,9 +11,9 @@
import numpy as np
import scipy.signal
import matplotlib.pyplot as plt
from . import metadata
from . import motion_metrics
from . import ultrasound_utils
import metadata
import motion_metrics
import ultrasound_utils
from pathlib import Path


Expand Down Expand Up @@ -484,6 +484,8 @@ def process_scan(ultrasound, metadata_filename, strict=None,
## Find peaks
peaks = scipy.signal.find_peaks(-results, distance=max(1,len(results)//distance))[0]
sorted_peaks = peaks[np.argsort(results[peaks])]
if len(sorted_peaks) == 0:
sorted_peaks = np.argsort(results)[0:len(results)//distance:]

return sorted_peaks, results

Expand Down