SnakeMaker parser

Requires python>=3.12

With standard pip virtualvenv

1. Create virtualenv and Activate it
2. install with : 'pip install -e .'
3. Look for all in the config files and replace them with the correct path, also in demo_functions path for the shell function
4. Run with : 'python SnakeMaker/snakemaker.py'

With UV

1. Install uv from this link
2. Run uv venv from default Snakemaker folder to create a virtual environment
3. Activate virtualenvironment
4. Run uv pip install -e .
5. Run with 'python SnakeMaker/snakemaker.py'

To run documentation locally:

1. Install mkdocs with 'pip install mkdocs' (should be installed in the virtualenv after running 'pip install .')
2. Run 'mkdocs serve' in the docs directory.
3. Open the browser and go to 'http://localhost:8000'