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1. Single_cell_Prox_seq_data_analysis Single_cell_Prox_seq_data_analysis Public

   This is a python-based computational pipeline including package scanpy, scvi, and Prox-seq custom script ProxseqClasses.

   Jupyter Notebook 1

2. Prox-seq Prox-seq Public

   Forked from tay-lab/Prox-seq

   Software for Prox-seq

   Jupyter Notebook

3. Prox-seq_computation Prox-seq_computation Public

   Forked from tay-lab/Prox-seq_computation

   A computational framework for simulating and analyzing Prox-seq data

   Jupyter Notebook 1

4. scverse/scanpy scverse/scanpy Public

   Single-cell analysis in Python. Scales to >100M cells.

   Python 2.4k 736

5. scverse/scvi-tools scverse/scvi-tools Public

   Deep probabilistic analysis of single-cell and spatial omics data

   Python 1.6k 446

6. Teichlab/celltypist Teichlab/celltypist Public

   A tool for semi-automatic cell type classification

   Python 470 60