Issues

• [Feature Request] Update GTDB r232 and GTDB-Tk v2.7.0

  jolespin/veba#206 · Filter by author jolespin opened on Apr 27, 2026

• [Feature Request] HMM Builder

  jolespin/veba#205 · Filter by author jolespin opened on Apr 17, 2026

• [Feature Request] Add REMAG support

  jolespin/veba#199 · Filter by author jolespin opened on Apr 2, 2026

• [Database] MicroEuk100 v3 has Bacteria on them?

  jolespin/veba#192 · Filter by author franlat opened on Dec 3, 2025
  5

• [Bug] identifier_mapping.tsv is not created for eukaryotic_gene_modeling_wrapper.py when --name is provided

  jolespin/veba#191 · Filter by author jolespin opened on Sep 24, 2025
  1

• [Feature Request] - Add VEBA version information to essentials output

  jolespin/veba#190 · Filter by author jolespin opened on Jul 18, 2025

• [Bug] Too Many Open File Handles while running partition_gene_models.py of binning-eukaryotic moudle

  jolespin/veba#189 · Filter by author Liping-L opened on Jun 29, 2025
  1

• [Feature Request] Add size of BGC in identifier_mapping.bgc.tsv.gz

  jolespin/veba#186 · Filter by author jolespin opened on Jun 24, 2025

• [Feature Request] Use reads when detecting CRISPR-Cas systems

  jolespin/veba#185 · Filter by author jolespin opened on Jun 20, 2025

• [Feature Request] Add support for myloasm long read assembly

  jolespin/veba#183 · Filter by author jolespin opened on May 30, 2025

• [Feature Request] Create skani_wrapper.py that wraps edgelist_to_clusters.py

  jolespin/veba#182 · Filter by author jolespin opened on May 30, 2025

• [Bug] If there's no viruses, then an empty file is created by essentials

  jolespin/veba#180 · Filter by author jolespin opened on May 25, 2025

• [Feature Request] Report number of reads aligned to each contig in assembly modules

  jolespin/veba#179 · Filter by author jolespin opened on May 22, 2025

• [Feature Request] - Add id_contig to identifier_mapping.proteins.tsv.gz produced by cluster.py

  jolespin/veba#174 · Filter by author jolespin opened on Apr 24, 2025

• [Bug] BUSCO doesn't write outputs on docker container but same code works when running locally

  jolespin/veba#171 · Filter by author jolespin opened on Apr 24, 2025
  1

• [Feature Request] Support custom annotation databases

  jolespin/veba#157 · Filter by author jolespin opened on Apr 2, 2025

• [Bug] MetaEuk GFF files having start coordinates greater than the end coordinate.

  jolespin/veba#152 · Filter by author pereiramemo opened on Mar 22, 2025
  1

• [Feature Request] Add MIBiG BGC ids to biosynthetic output

  jolespin/veba#142 · Filter by author jolespin opened on Feb 20, 2025

• [Feature Request] bioconda recipe

  jolespin/veba#95 · Filter by author cmkobel opened on May 15, 2024
  3

• [Question] Is it possible to use the VEBA Microeukaryotic database with MMSEQS2 taxonomy?

  jolespin/veba#35 · Filter by author franlat opened on Nov 16, 2023
  19