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Probabilistic ALE
Here subsampling ist done, systematically repeating an ALE meta-analysis multiple times, leaving out a certain amount of experiments (k) in each iteration. If in the analysis_file the number specified after the P is N - 1 (Overall number of experiments-1), a leave-one-out jackknife analysis is performed, with as many ALE analyses being conducted as there are experiments, each excluding one single experiment. If the number specified after the P is smaller than N - 1, multiple ALE analyses are conducted, each excluding several experiments (k). This approach provides insight into the robustness of the main effect ALE results.
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Initial ALE Analysis:
- Conduct the main effect ALE meta-analysis using all ( N ) experiments to identify significant activation patterns.
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Iterative Exclusion:
- For each iteration/subsample (default=2500 but the maximum of unique subsamples that can be created from the dataset):
- Exclude k experiments from the dataset.
- Perform the ALE meta-analysis on the remaining ( N-k ) experiments.
- Binarize the resulting thresholded map
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Create an average map across subsamples:
- Averaging the binarized maps across all subsample analyses provides a map showing voxelwise relative frequency of significance across subsamples.
- Larger values indicate more robustness
- A value of 1 indicates that in all subsample analyses the voxel was significant.
Please note that the resulting map should be interpreted depending on k and that k should be selected based on the absolute number of experiments, i.e. the smaller the dataset, the smaller k should be.
This wiki will explain to you everything you need to know to run an ALE meta-analysis from scratch:
- How to set-up python using pyenv (Mac OS and Linux only)
- How to install JALE
- How to set-up a project folder and the required input files.
- What kind of output will be created and how to interpret it.