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Merged
liz-is merged 1 commit into from
Apr 7, 2026
Merged

Update 7 packages #15

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27 changes: 23 additions & 4 deletions renv/activate.R
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
local({

# the requested version of renv
version <- "1.1.7"
attr(version, "md5") <- "dd5d60f155dadff4c88c2fc6680504b4"
version <- "1.2.0"
attr(version, "md5") <- "b7d230b07507f361d3bcf794d157a188"
attr(version, "sha") <- NULL

# the project directory
Expand Down Expand Up @@ -226,13 +226,17 @@ local({
section <- header(sprintf("Bootstrapping renv %s", friendly))
catf(section)

# ensure the target library path exists; required for file.copy(..., recursive = TRUE)
dir.create(library, showWarnings = FALSE, recursive = TRUE)

# try to install renv from cache
md5 <- attr(version, "md5", exact = TRUE)
if (length(md5)) {
pkgpath <- renv_bootstrap_find(version)
if (length(pkgpath) && file.exists(pkgpath)) {
file.copy(pkgpath, library, recursive = TRUE)
return(invisible())
ok <- file.copy(pkgpath, library, recursive = TRUE)
if (isTRUE(ok))
return(invisible())
}
}

Expand Down Expand Up @@ -1231,6 +1235,21 @@ local({
}

renv_bootstrap_run <- function(project, libpath, version) {
tryCatch(
renv_bootstrap_run_impl(project, libpath, version),
error = function(e) {
msg <- paste(
"failed to bootstrap renv: the project will not be loaded.",
paste("Reason:", conditionMessage(e)),
"Use `renv::activate()` to re-initialize the project.",
sep = "\n"
)
warning(msg, call. = FALSE)
}
)
}

renv_bootstrap_run_impl <- function(project, libpath, version) {

# perform bootstrap
bootstrap(version, libpath)
Expand Down
44 changes: 22 additions & 22 deletions renv/profiles/lesson-requirements/renv.lock
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"R": {
"Version": "4.5.2",
"Version": "4.5.3",
"Repositories": [
{
"Name": "carpentries",
Expand Down Expand Up @@ -320,16 +320,16 @@
},
"fs": {
"Package": "fs",
"Version": "1.6.6",
"Version": "2.0.1",
"Source": "Repository",
"Title": "Cross-Platform File System Operations Based on 'libuv'",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
"Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
"License": "MIT + file LICENSE",
"URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
"BugReports": "https://github.com/r-lib/fs/issues",
"Depends": [
"R (>= 3.6)"
"R (>= 4.1)"
],
"Imports": [
"methods"
Expand All @@ -347,22 +347,22 @@
"withr"
],
"VignetteBuilder": "knitr",
"ByteCompile": "true",
"SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/usethis/last-upkeep": "2025-04-23",
"Copyright": "file COPYRIGHTS",
"Encoding": "UTF-8",
"Language": "en-US",
"RoxygenNote": "7.2.3",
"SystemRequirements": "GNU make",
"RoxygenNote": "7.3.3",
"NeedsCompilation": "yes",
"Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]",
"Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
"Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
"Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
"Repository": "CRAN"
},
"highr": {
"Package": "highr",
"Version": "0.11",
"Version": "0.12",
"Source": "Repository",
"Type": "Package",
"Title": "Syntax Highlighting for R Source Code",
Expand All @@ -384,11 +384,11 @@
"BugReports": "https://github.com/yihui/highr/issues",
"VignetteBuilder": "knitr",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"RoxygenNote": "7.3.3",
"NeedsCompilation": "no",
"Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
"Author": "Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
"Maintainer": "Yihui Xie <xie@yihui.name>",
"Repository": "RSPM"
"Repository": "CRAN"
},
"htmltools": {
"Package": "htmltools",
Expand Down Expand Up @@ -674,7 +674,7 @@
},
"renv": {
"Package": "renv",
"Version": "1.1.7",
"Version": "1.2.0",
"Source": "Repository",
"Type": "Package",
"Title": "Project Environments",
Expand Down Expand Up @@ -716,20 +716,20 @@
"webfakes"
],
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"RoxygenNote": "7.3.3",
"VignetteBuilder": "knitr",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/testthat/parallel": "true",
"Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
"NeedsCompilation": "no",
"Author": "Kevin Ushey [aut, cre] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
"Maintainer": "Kevin Ushey <kevin@rstudio.com>",
"Repository": "CRAN"
"Repository": "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
},
"rlang": {
"Package": "rlang",
"Version": "1.1.7",
"Version": "1.2.0",
"Source": "Repository",
"Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
"Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.",
Expand Down Expand Up @@ -757,7 +757,7 @@
"pkgload",
"rmarkdown",
"stats",
"testthat (>= 3.2.0)",
"testthat (>= 3.3.2)",
"tibble",
"usethis",
"vctrs (>= 0.2.3)",
Expand All @@ -780,7 +780,7 @@
},
"rmarkdown": {
"Package": "rmarkdown",
"Version": "2.30",
"Version": "2.31",
"Source": "Repository",
"Type": "Package",
"Title": "Dynamic Documents for R",
Expand Down Expand Up @@ -827,7 +827,7 @@
"Config/Needs/website": "rstudio/quillt, pkgdown",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"RoxygenNote": "7.3.3",
"SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org",
"NeedsCompilation": "no",
"Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [aut] (ORCID: <https://orcid.org/0000-0003-4474-2498>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: <https://orcid.org/0000-0003-3925-190X>), Andrew Dunning [ctb] (ORCID: <https://orcid.org/0000-0003-0464-5036>), Atsushi Yasumoto [ctb, cph] (ORCID: <https://orcid.org/0000-0002-8335-495X>, cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: <https://orcid.org/0000-0002-4958-2844>), Devon Ryan [ctb] (ORCID: <https://orcid.org/0000-0002-8549-0971>), Frederik Aust [ctb] (ORCID: <https://orcid.org/0000-0003-4900-788X>), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: <https://orcid.org/0000-0002-4064-6012>), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)",
Expand Down Expand Up @@ -872,7 +872,7 @@
},
"tinytex": {
"Package": "tinytex",
"Version": "0.58",
"Version": "0.59",
"Source": "Repository",
"Type": "Package",
"Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
Expand All @@ -897,7 +897,7 @@
},
"xfun": {
"Package": "xfun",
"Version": "0.56",
"Version": "0.57",
"Source": "Repository",
"Type": "Package",
"Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'",
Expand Down
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